View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7072_low_2 (Length: 553)
Name: NF7072_low_2
Description: NF7072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7072_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 22 - 543
Target Start/End: Original strand, 28407676 - 28408199
Alignment:
| Q |
22 |
ttttatcatatgttattcaaataaaatgctcaccatttatccacaataaccatggaacgtagttcacaattagcaaagctgtcaaacatgaaaaccacat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28407676 |
ttttatcatatgttattcaaataaaatgcttaccatttatccacaataaccatggaacgtagttcacaattagcaaagctgtcaaacatgaaaaccacat |
28407775 |
T |
|
| Q |
122 |
tttatcaatttgtccaatgaaagtgtaacatatgtggggtatgcactttcaggagagatgcttactgtgcacacatttcagtcttaatatttgggtgaca |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28407776 |
tttatcaatttgtccaatgaaagtgtaacatatgtggggtatgcactttcaggagtgatacttactgtgcacacatttcagtcttaatatttgggtgaca |
28407875 |
T |
|
| Q |
222 |
gtcatttccaaaagcactaagggtattaaacagaaaactgctgtgtgtaacaacagctatctccttctctttacgtgtacacaacctgaaccaaatcaat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28407876 |
gtcatttccaaaagcactaagggtattaaacagaaaactgctgtgtgtaacaacagctatctccttctctttacgtgtacacaacctgaaccaaatcaat |
28407975 |
T |
|
| Q |
322 |
aaagaaatttgagaaaaatgatatcagatctttggttattcaagtatcacaaatgcaagaaacaagctctttagatgcatttcaaaatcacaataatatc |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28407976 |
aaagaaatttgagaaaaatgatatcagatctttggttattcaagtatcacaaatgcaagaaacaagctctttagatgcatttcaaaatcacaataatatc |
28408075 |
T |
|
| Q |
422 |
ata-tgaaaatatgaaatcctaactt-aagagaattgtagtgatgctttgttaaaattaattaatcacactcaccattccaaaaacttgagtcctctacc |
519 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28408076 |
atattgaaaatatgaaatcctaacttaaagagaattgtagtgatgctttgataaaataaattaatcacactcaccattccaaaaacttgagtcctctacc |
28408175 |
T |
|
| Q |
520 |
agtaacttcttctttcttctctct |
543 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28408176 |
agtaacttcttctttcttctctct |
28408199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 543
Target Start/End: Complemental strand, 52015735 - 52015679
Alignment:
| Q |
487 |
cactcaccattccaaaaacttgagtcctctaccagtaacttcttctttcttctctct |
543 |
Q |
| |
|
|||||||||||||||||| || ||||| || ||| ||||||||| ||||||||||| |
|
|
| T |
52015735 |
cactcaccattccaaaaatttcagtcccctggcagcaacttcttcattcttctctct |
52015679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University