View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7072_low_5 (Length: 479)
Name: NF7072_low_5
Description: NF7072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7072_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 28341560 - 28341112
Alignment:
| Q |
19 |
ttttcttcagggcaaacttcaacatcgccgttttctccgtcaacttttgcttcctgttcatccttcacagattccaccttctgaatttcctgaatcttgg |
118 |
Q |
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| T |
28341560 |
ttttcttcggggtaaacttcaacatcgccgttttctccgtcaactttcacttcctgttcatccatcacagattccaccttctgaatttcctgaatcttgg |
28341461 |
T |
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| Q |
119 |
tttcgacaaccatctccggcccacaattcgtatcctttgctgccaaatccggtaaagtctccggacatttcacctgactcaactcaggattcgtggtttt |
218 |
Q |
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| T |
28341460 |
tttcgacaaccatctccggcccacaattcgtatcctttgctgccaaatccggtaaagtctccggacattccacctgactcaaatcaggattcatggttgt |
28341361 |
T |
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| Q |
219 |
cgacgacagaggaggtggagatgaatcttccggtggcggaggaggaggtggagttgaatcttccagtggcggaggagatgaatcttcaaactttggaacg |
318 |
Q |
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| T |
28341360 |
caacgagggaggaggtggagatgaatcttccggtggcggaggaggaggtggagttgaatcttccattggcggaggagatgaatcttcaaattttggaacg |
28341261 |
T |
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| Q |
319 |
tgaacggaattgagcaactcaaggagactgttaggtcttgaattgtggccgttcttgttgttagcacgaacagggaagaggaagagcctcaatcttaccg |
418 |
Q |
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|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28341260 |
tgaacggaattgagcaactcaaagagactgtaagatcttgaattgtggccgttcttgttgttagcacgaacagggaagaggaaaagcctcaatcttaccg |
28341161 |
T |
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| Q |
419 |
gctgctttggagaagcgcgacacatacgatcatactcgaccatcatatt |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28341160 |
gctgctttggagaagcgcgacacatacgatcatactcgaccatcatatt |
28341112 |
T |
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