View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7072_low_6 (Length: 461)
Name: NF7072_low_6
Description: NF7072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7072_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 156 - 438
Target Start/End: Original strand, 4592527 - 4592812
Alignment:
| Q |
156 |
cagatgtagcagaccaagttgatgtgttttaatattaaactagtttcctaccaaagtgctatataccaattgtatggttttaaatcgaatttgagatctt |
255 |
Q |
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| T |
4592527 |
cagatgtagcagaccaagttgatgtgtttttatattaaactagtttcctaccaaagtgctatataccaattgtatggttttaaatcgaatttgagatctt |
4592626 |
T |
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| Q |
256 |
tataacagcatcacagcagttat---ttcaattgcatcagccacatttttccgcaatataaagaaggttcatagtataacagaatccataatttaaaact |
352 |
Q |
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| T |
4592627 |
tgtaacggcatcacagcagttattatttcaattgcatcagccacatttttccgcaatataaagaaggttcatagtataacagaatccataatttaaaact |
4592726 |
T |
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| Q |
353 |
atgataccgctaaaaatggaacgaaagatgcaaatcagaaagcttgataatccctaatacaatgaaaagattacataactaaacat |
438 |
Q |
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| T |
4592727 |
atgataccgctaaaaatggaacgaaagatgcaaatcagaaagcttgataatccctaatacaatgaaaagattacataactaaacat |
4592812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 4592243 - 4592395
Alignment:
| Q |
1 |
tgagattaatctagaccaatgttttactctagagaccaattatgctaaagcaatgcaatcataaatcgataacaaaaattaacatgccctgtcatgattt |
100 |
Q |
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| T |
4592243 |
tgagattaatctagaccaatgttttactctagagaccaattatgctaaagcaatgcaatcataaatcgataacaaaaattaacatgccctgtcatgattt |
4592342 |
T |
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| Q |
101 |
gctgtcagcatttcctactgtggtagtctcggccataggtcaaagatcggacg |
153 |
Q |
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| T |
4592343 |
gctgtcagcatttcctactgtggtagtctcggccatatgtcaaagatcggacg |
4592395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 4584525 - 4584575
Alignment:
| Q |
87 |
ccctgtcatgatttgctgtcagcatttcctactgtggtagtctcggccata |
137 |
Q |
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| T |
4584525 |
ccctgtcatgatttgcagtcagcatttcctactgttgtaatctcggccata |
4584575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 4584970 - 4585028
Alignment:
| Q |
353 |
atgataccgctaaaaatggaacgaaagatgcaaatcagaaagcttgataatccctaatac |
412 |
Q |
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| T |
4584970 |
atgataccagtaaaaatggaactaaa-atgaaaatctgaaagcttgataatccctaatac |
4585028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 4584743 - 4584787
Alignment:
| Q |
156 |
cagatgtagcagaccaagttgatgtgttttaatattaaactagtt |
200 |
Q |
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| T |
4584743 |
cagatgtagcagacgaagttgatgcgttttcgtattaaactagtt |
4584787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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