View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7072_low_7 (Length: 418)
Name: NF7072_low_7
Description: NF7072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7072_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 372
Target Start/End: Original strand, 7056134 - 7056495
Alignment:
| Q |
11 |
gagatggacatcaacaagtttgacgccattttcgagaacgacaggaggagatgatggaagtgcaccgtggtttacgctgaccgtgaaggcgagttctgca |
110 |
Q |
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| T |
7056134 |
gagatgaacttcagcaagtttgacgccgttttcgagaacgatgggaggagatgatggaagtgcgccgtggtttacgctgacagtgaaggcgagttctgcg |
7056233 |
T |
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| Q |
111 |
tcgttgacttcaatagcgatggcgcgaacggcaagaccgtgtgaagcgcagaaggagaagcaagtggaggcagagaaggttggaatggaggcggttgagg |
210 |
Q |
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| T |
7056234 |
tcgtcgacttcaatagcgatggcgcgaacggcaaggccgtgtgaagcgcagaaggagaagcaagtggaggcagagaaggtgggaatggaggcggttgagg |
7056333 |
T |
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| Q |
211 |
aaggcgaggagagagaaatggaaggggaatatggggcggagaagaggaaatttaggtcgccagagcggaggagataggaagcgtgaattaggtttccggt |
310 |
Q |
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| T |
7056334 |
aaggcgaggagagagaaatggaaggggaatatggggcggagaagaggaaattgaggtcgccagagcggaggagataggaagcgtgaattaggtttccggt |
7056433 |
T |
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| Q |
311 |
ggacaggtcggatttagcgacgattggcataccaagtccttgagagaaacgaagtgcggtgt |
372 |
Q |
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| T |
7056434 |
ggacaggtcggatttagcgacgattggcataccaagtccttgagagaaacgaagtgcggtgt |
7056495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 27 - 361
Target Start/End: Original strand, 39642288 - 39642622
Alignment:
| Q |
27 |
agtttgacgccattttcgagaacgacaggaggagatgatggaagtgcaccgtggtttacgctgaccgtgaaggcgagttctgcatcgttgacttcaatag |
126 |
Q |
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| T |
39642288 |
agtttgacgccattttcaagaacgacgggaggagatgatggaagtgcgccgtagcttacgctgacggtgtaagcgagttccgcgtcttcaacttcgacag |
39642387 |
T |
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| Q |
127 |
cgatggcgcgaacggcaagaccgtgtgaagcgcagaaggagaagcaagtggaggcagagaaggttggaatggaggcggttgaggaaggcgaggagagaga |
226 |
Q |
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| T |
39642388 |
cgagggcgcggacgttgaggccgtgggagttggagaaggagaagcaagtggagggggagaaagttggaatggaggcggttgaggaaggtgaggagagaga |
39642487 |
T |
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| Q |
227 |
aatggaaggggaatatggggcggagaagaggaaatttaggtcgccagagcggaggagataggaagcgtgaattaggtttccggtggacaggtcggattta |
326 |
Q |
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| T |
39642488 |
aatggaaggggaatatgcggcggtgaagaggaaattgaggtcaccggagcggaggagataggaagcgtgagtaaggtttccggtggagaggtcggatttg |
39642587 |
T |
|
| Q |
327 |
gcgacgattggcataccaagtccttgagagaaacg |
361 |
Q |
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| T |
39642588 |
gcgacgattggcatgccgagtccatgagagaaacg |
39642622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 27 - 372
Target Start/End: Complemental strand, 39679946 - 39679601
Alignment:
| Q |
27 |
agtttgacgccattttcgagaacgacaggaggagatgatggaagtgcaccgtggtttacgctgaccgtgaaggcgagttctgcatcgttgacttcaatag |
126 |
Q |
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||||||||| ||||||||| | || |||||||| ||||||| ||||||| ||||||||||| ||||| |||| ||| || || | |||||||| || |
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| T |
39679946 |
agtttgacgttattttcgaggataaccggaggagacgatggaattgcaccgaggtttacgctggtggtgaaagcgacttcagcgtcttcgacttcaacag |
39679847 |
T |
|
| Q |
127 |
cgatggcgcgaacggcaagaccgtgtgaagcgcagaaggagaagcaagtggaggcagagaaggttggaatggaggcggttgaggaaggcgaggagagaga |
226 |
Q |
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| T |
39679846 |
caacagcacggacggcgaggccgtgggaagcggagaaggagaagcaagtggaagcggagaaagtggggattgcggcggttgaggaaggtgaggagagaga |
39679747 |
T |
|
| Q |
227 |
aatggaaggggaatatggggcggagaagaggaaatttaggtcgccagagcggaggagataggaagcgtgaattaggtttccggtggacaggtcggattta |
326 |
Q |
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||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |
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| T |
39679746 |
aatggaaggggaatatgcggcggagaagaggaagttgaggtcgccggagcggaggagataagaagcgtgagttaggtttccggtggagaggtcggattta |
39679647 |
T |
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| Q |
327 |
gcgacgattggcataccaagtccttgagagaaacgaagtgcggtgt |
372 |
Q |
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| T |
39679646 |
gcgacaatcggcattccgagtccgtgagagaagcggcgtgcggtgt |
39679601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 179 - 372
Target Start/End: Original strand, 39637748 - 39637941
Alignment:
| Q |
179 |
ggcagagaaggttggaatggaggcggttgaggaaggcgaggagagagaaatggaaggggaatatggggcggagaagaggaaatttaggtcgccagagcgg |
278 |
Q |
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||||||||||| ||||||||||| |||| |||||| |||||||| ||||| |||||||| || | |||||||| |||| ||| |||||||| |||||| |
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| T |
39637748 |
ggcagagaaggagggaatggaggccgttggggaaggtgaggagagtgaaatagaaggggagtaagctgcggagaaaaggagattgaggtcgccggagcgg |
39637847 |
T |
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| Q |
279 |
aggagataggaagcgtgaattaggtttccggtggacaggtcggatttagcgacgattggcataccaagtccttgagagaaacgaagtgcggtgt |
372 |
Q |
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| T |
39637848 |
aggaggtaggaagcatgagttaggattccagtggagaggtcggatttagcaacgattggcattccgagtccgtgagagaatcggcgtgcggtgt |
39637941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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