View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7072_low_8 (Length: 394)
Name: NF7072_low_8
Description: NF7072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7072_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 68 - 383
Target Start/End: Original strand, 56265366 - 56265679
Alignment:
| Q |
68 |
tctgacacatggaatttattggaaagagacagagtgcatgcnnnnnnntgatggtataaggacacttaaaaaggaacaattaaagaaactt--------- |
158 |
Q |
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| T |
56265366 |
tctgacacatggaatttattggaaagagacagagtgcatgcaaaaaaatgatggtataaggacacttaaaaaggaacaattaaagaaacgtaagagactc |
56265465 |
T |
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| Q |
159 |
-ctttaacctttacattcattcattcaggtctcaaatacgagtacaaagcagttaatctgttgaagggagaacaatctcatcctggttagttgcttcctc |
257 |
Q |
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| T |
56265466 |
actttaacctttacattcattcattcaggtctcaaatatgattacaaagcagttaatctgttgaagggagaacaatctcatcctggttagttgcttc--c |
56265563 |
T |
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| Q |
258 |
tctcttttccttaatccttatctattctattctataccatctcaattgcattataacattattatttcattttcatatctttcagattttctcaagctca |
357 |
Q |
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| T |
56265564 |
tctcttttccttaccc----------ctaatctataccatctcaattgaattataacattattatttcattttcatatctttcagattttctccagctca |
56265653 |
T |
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| Q |
358 |
accctgttggttttgttcctgttctt |
383 |
Q |
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| T |
56265654 |
accctgttggttttgttcctgttctt |
56265679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 188 - 383
Target Start/End: Original strand, 56253832 - 56254015
Alignment:
| Q |
188 |
ctcaaatacgagtacaaagcagttaatctgttgaagggagaacaatctcatcctggttagttgcttcctctctcttttccttaatccttatctattctat |
287 |
Q |
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| T |
56253832 |
ctcaaatatgattacaaagcagttaatctgttgaagggagaacaatctcatcctggttagttgcttcctctct--tttccttacccctaatcta------ |
56253923 |
T |
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| Q |
288 |
tctataccatctcaattgcattataacattattatttcattttcatatctttcagattttctcaagctcaaccctgttggttttgttcctgttctt |
383 |
Q |
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| T |
56253924 |
----taccatctcaattgaattataacattattatttcattttcatatctttcagattttctccagctcaaccctgttggttttgttcctgttctt |
56254015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 56262471 - 56262403
Alignment:
| Q |
315 |
attattatttcattttcatatctttcagattttctcaagctcaaccctgttggttttgttcctgttctt |
383 |
Q |
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| T |
56262471 |
attattatttcattttcatatctttcagattttctcaagctcaaccctgttggttttgttcctgttctt |
56262403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 56265271 - 56265327
Alignment:
| Q |
16 |
atcaattcaagactttattcttctataaaatattcttcaaaattttaacaattctga |
72 |
Q |
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| T |
56265271 |
atcaattcaagaatttattcttctataaaatattcttcaaaattttaacaattctga |
56265327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 56263291 - 56263230
Alignment:
| Q |
184 |
aggtctcaaatacgagtacaaagcagttaatctgttgaagggagaacaatctcatcctggtt |
245 |
Q |
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| T |
56263291 |
aggtctcaagtacgagtacaaagcagttgatctttttaagggagaacaatatcatcctggtt |
56263230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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