View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_high_12 (Length: 340)
Name: NF7073_high_12
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_high_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 204 - 340
Target Start/End: Complemental strand, 114696 - 114560
Alignment:
| Q |
204 |
cttactgctgctcgtgtcgttttcaaatattgcaggtggtatctaatatctataactttcaacgcaaaatggacagaatgaaagttgttaaatataggtg |
303 |
Q |
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| T |
114696 |
cttactgctgctcgtgtcgttttcaaatattgcaggtggtatctaatatctataactttcaacgcaaaatggacagaatgaaagttgttaaatagaggtg |
114597 |
T |
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| Q |
304 |
atggcaagccactagtattggtcaagtatgttcaaac |
340 |
Q |
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| T |
114596 |
atggcaagccactagtattggtcaagtatgttcaaac |
114560 |
T |
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Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 114913 - 114754
Alignment:
| Q |
18 |
aaagtgacatgatagatatgatataatagaaa-gnnnnnnnnnntagagagaaaacgaagtattgagtagagagcaaattatatacatacatgtcttatt |
116 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114913 |
aaagtgacatgatagatatgatataatagaaaagaaaaaaaaaatagagagaaaacgaagtattgagtagagagcaaattatatacatacatgtcttatt |
114814 |
T |
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| Q |
117 |
cactaccaagtcaacatagctatcaaacgctgcaaatgtatggccaatattaaagaaatc |
176 |
Q |
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| T |
114813 |
cactaccaagtcaacatagctatcaaacgctgcaaatgtatggccaatattaaagaaatc |
114754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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