View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_high_16 (Length: 250)
Name: NF7073_high_16
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_high_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 114113 - 114325
Alignment:
| Q |
38 |
caaaaagcaaattccattaattcatataaacttctaataacaagcaaagctaccattnnnnnnncttaaatatagttttaagtctctctattttgcttca |
137 |
Q |
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| T |
114113 |
caaaaagcaaattccattaattcatataaacttctaataacaagcaaagctaccattaaaaaaacttaaatatagttttaagtctctctattttgcttca |
114212 |
T |
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| Q |
138 |
ttcaggatattggtcctattgtttcaaaatgtatggtcaattgaatcgatgatttgatactgtctaggtaaattttcatttcctatcatcaattcagttg |
237 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114213 |
ttcacgatattggtcctattgtttcaaaatgtatggtcaattgaatcaatgatttgatactgtctaggtaaattttcatttcctatcatcaattcagttg |
114312 |
T |
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| Q |
238 |
ccgcataaccatt |
250 |
Q |
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||||||||||||| |
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| T |
114313 |
ccgcataaccatt |
114325 |
T |
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