View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7073_high_20 (Length: 243)

Name: NF7073_high_20
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7073_high_20
NF7073_high_20
[»] chr4 (5 HSPs)
chr4 (12-243)||(13214610-13214838)
chr4 (23-141)||(23821981-23822098)
chr4 (45-158)||(32602045-32602157)
chr4 (42-163)||(20233349-20233467)
chr4 (114-158)||(30065027-30065071)
[»] chr1 (1 HSPs)
chr1 (12-182)||(2199185-2199353)
[»] chr5 (3 HSPs)
chr5 (12-181)||(10110824-10110991)
chr5 (88-136)||(14628835-14628884)
chr5 (21-64)||(14628786-14628829)
[»] scaffold0103 (1 HSPs)
scaffold0103 (12-183)||(29907-30074)
[»] chr3 (2 HSPs)
chr3 (12-181)||(28762138-28762305)
chr3 (43-163)||(50229830-50229946)
[»] chr2 (2 HSPs)
chr2 (21-183)||(33712369-33712527)
chr2 (12-180)||(8335593-8335757)
[»] chr7 (2 HSPs)
chr7 (12-83)||(36937047-36937118)
chr7 (112-158)||(36937120-36937166)
[»] chr8 (2 HSPs)
chr8 (22-84)||(3471084-3471146)
chr8 (45-149)||(30029025-30029128)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 13214610 - 13214838
Alignment:
Q  12 acatcaaataatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaattaaaaat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||  ||||||||||||||||||||||    
T  13214610 acatcaaataatcaacaacttttggacaagtagtataaaaatacatcaattataactattaatgtgactataagag--agagaaacaactaattaaaaat 13214707  T
Q  112 gatatagtatctatacggtatagatatacgatgttggacaaccaaaatgttgccaaatatatcatttctcttgttttaacatgtggaacatgttagacaa 211  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |    
T  13214708 gatatagtatctatgcggtatagatatacgatattggacaaccaaaatgttgtcaaatatatcatttctcttgttttaacatgtgcaacatgttagac-a 13214806  T
Q  212 acccttagaataaaactacttgtgacatgcaa 243  Q
    ||||||||||||||||||||||||||||||||    
T  13214807 acccttagaataaaactacttgtgacatgcaa 13214838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 23822098 - 23821981
Alignment:
Q  23 tcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaattaaaaa-tgatatagtat 121  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||| ||| |||||||    
T  23822098 tcaacaacttttgaacaactagtataaaaatacatcaattataactattgatgtgactataagaga--gagaaacaactaattaaaaagtgacatagtat 23822001  T
Q  122 ctatacggtatagatatacg 141  Q
    ||||||| ||||||||||||    
T  23822000 ctatacgatatagatatacg 23821981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 32602157 - 32602045
Alignment:
Q  45 tataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaatt-aaaaatgatatagtatctatacggtatagatatacgat 143  Q
    ||||||||||||||| ||||||| | |||| ||||||||   |||||||||  |||||||| |||||||||||| ||  |||||  |||| ||||||| |    
T  32602157 tataaaaatacatcatttataacgaatgatgtgactata--tgagagagaagtaactaattaaaaaatgatatattacttatacaatataaatatacgtt 32602060  T
Q  144 gttggacaaccaaaa 158  Q
    |||||||||||||||    
T  32602059 gttggacaaccaaaa 32602045  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 20233349 - 20233467
Alignment:
Q  42 tagtataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaatta-aaaatgatatagtatctatacggtatagatatac 140  Q
    ||||||||||||| |||  |||||||| ||||| ||||||||| |||||    |  || |||||| ||||||| ||||||||||||  ||||||||||||    
T  20233349 tagtataaaaatatatcttttataactgttgatgtgactataaaagaga----attaattaattacaaaatgaaatagtatctatatagtatagatatac 20233444  T
Q  141 gatgttggacaaccaaaatgttg 163  Q
    | |||||||||||| || |||||    
T  20233445 gttgttggacaaccgaattgttg 20233467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 30065027 - 30065071
Alignment:
Q  114 tatagtatctatacggtatagatatacgatgttggacaaccaaaa 158  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||    
T  30065027 tatagtatctatacagtatagatataagttgttggacaaccaaaa 30065071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 2199185 - 2199353
Alignment:
Q  12 acatcaaataatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaatt-aaaaa 110  Q
    ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||| |||||    
T  2199185 acatctaaaaatcaacaacttttggacaactagtataaaaatacatcaattataactattgatgtgactata--agagagagaaacaactaattaaaaaa 2199282  T
Q  111 tgatatagtatctatacggtatagatatacgatgttggacaaccaaaatgttgccaaatatatcatttctct 182  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  2199283 tgacgtagtatctatacggtatagatatacgatgttggacaaccaaaaggttgtc-aatatatcatttctct 2199353  T

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Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 10110991 - 10110824
Alignment:
Q  12 acatcaaataatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaatt-aaaaa 110  Q
    ||||| || ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||    
T  10110991 acatctaaaaatcaacaacttttgaacaactagtataaaaatacatcaattataactattgatgtgactataagaga--gagaaacaactaattaaaaaa 10110894  T
Q  111 tgatatagtatctatacggtatagatatacgatgttggacaaccaaaatgttgccaaatatatcatttctc 181  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  10110893 tgacatagtatctatacggtatagatatacgatgttggacaaccaaaaggttgtc-aatatatcatttctc 10110824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 14628835 - 14628884
Alignment:
Q  88 agagagaaacaactaattaaaa-atgatatagtatctatacggtatagat 136  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  14628835 agagagaaacaactaattaaaaaatgatatagtatctatacagtatagat 14628884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 14628786 - 14628829
Alignment:
Q  21 aatcaacaacttttggacaagtagtataaaaatacatcaattat 64  Q
    ||||||||| |||||||||| || ||||||||||||||||||||    
T  14628786 aatcaacaatttttggacaactaatataaaaatacatcaattat 14628829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 30074 - 29907
Alignment:
Q  12 acatcaaataatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaatt-aaaaa 110  Q
    ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    ||||||||||||||| |||||    
T  30074 acatctaaaaatcaacaacttttggacaactagtataaaaatacatcaattataactattgatgtgactataaga----gagaaacaactaattaaaaaa 29979  T
Q  111 tgatatagtatctatacggtatagatatacgatgttggacaaccaaaatgttgccaaatatatcatttctctt 183  Q
    | ||||| |||||||| ||||||||||||||||||||||||||||||| |||| | |||||||||||||||||    
T  29978 ttatatattatctatatggtatagatatacgatgttggacaaccaaaaggttgtc-aatatatcatttctctt 29907  T

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Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 28762305 - 28762138
Alignment:
Q  12 acatcaaataatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaatt-aaaaa 110  Q
    ||||| || ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |||||||||  ||||||||||||||| |||||    
T  28762305 acatctaaaaatcaacaacttttgaacaactagtataaaaatacatcaattataactattgatgtgattataagaga--gagaaacaactaattaaaaaa 28762208  T
Q  111 tgatatagtatctatacggtatagatatacgatgttggacaaccaaaatgttgccaaatatatcatttctc 181  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||||||    
T  28762207 taatatagtatctatacggtatagatatacgatgttggacaaccaaaaggttgtc-aatatataatttctc 28762138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 50229830 - 50229946
Alignment:
Q  43 agtataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaattaaaaatgatatagtatctatacggtatagatatacga 142  Q
    ||||||||||||||  | ||||||||| ||||||||| ||||||||||    || || ||||||||||||| ||||||  ||||||||||| ||||| |     
T  50229830 agtataaaaatacacaatttataactaatgatatgaccataagagaga----aataagtaattaaaaatgaaatagtacttatacggtatacatatatgg 50229925  T
Q  143 tgttggacaaccaaaatgttg 163  Q
    | ||| |||||||||| ||||    
T  50229926 tattgaacaaccaaaaggttg 50229946  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 33712527 - 33712369
Alignment:
Q  21 aatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaattaaaaa-tgatatagt 119  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||    |||||||||||||||| |||||||||    
T  33712527 aatcaataatttttggacaactagtataaaaatacatcaattataactattgatgtgaccataagcgaga----aacaactaattaaaaaatgatatagt 33712432  T
Q  120 atctatacggtatagatatacgatgttggacaaccaaaatgttgccaaatatatcatttctctt 183  Q
    |||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||||    
T  33712431 atctatacagtatagatatacgatgttggacaaccaaaaggttgtc-aatatatcatttctctt 33712369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 8335757 - 8335593
Alignment:
Q  12 acatcaaataatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaatt-aaaaa 110  Q
    ||||| || ||| ||||| |||||||||| | ||||||||||||||||||||||||||||||| |||| |||    |||||||||||||||||| |||||    
T  8335757 acatctaaaaattaacaatttttggacaacttgtataaaaatacatcaattataactattgatgtgaccata----agagagaaacaactaattaaaaaa 8335662  T
Q  111 tgatatagtatctatacggtatagatatacgatgttggacaaccaaaatgttgccaaatatatcatttct 180  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||| |||| | ||||||||||||||    
T  8335661 tgatatagtatctatacagtatagatatacgatgttggacaactaaaaggttgtc-aatatatcatttct 8335593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 36937047 - 36937118
Alignment:
Q  12 acatcaaataatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactata 83  Q
    ||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  36937047 acatctaaaaatcaacaacttttggacaactagtttaaaaatacatcaattataactattgatatgactata 36937118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 36937120 - 36937166
Alignment:
Q  112 gatatagtatctatacggtatagatatacgatgttggacaaccaaaa 158  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||    
T  36937120 gatatagtatctatacaatatagatatacgatgttggataaccaaaa 36937166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 3471146 - 3471084
Alignment:
Q  22 atcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataa 84  Q
    |||||||||| | |||||| || |||||||||||| ||||||||||||||||| ||| |||||    
T  3471146 atcaacaactatgggacaattaatataaaaatacagcaattataactattgatgtgaatataa 3471084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 30029128 - 30029025
Alignment:
Q  45 tataaaaatacatcaattataactattgatatgactataagagagagagaaacaactaatt-aaaaatgatatagtatctatacggtatagatatacgat 143  Q
    ||||||||||||| | |||||||||||||  ||||||||   | |||||||| |||||||| |||||| | ||||||| ||||| ||||| ||||||| |    
T  30029128 tataaaaatacattatttataactattgacgtgactata--tgcgagagaaataactaattaaaaaataaaatagtatttatacagtataaatatacgtt 30029031  T
Q  144 gttgga 149  Q
    ||||||    
T  30029030 gttgga 30029025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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