View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_low_1 (Length: 818)
Name: NF7073_low_1
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 730; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 1 - 806
Target Start/End: Complemental strand, 32818474 - 32817686
Alignment:
| Q |
1 |
attcggaaagcataagtttgtttaattgcaatatactagtgagcaaaaatataaacaagaaattatgaacacatggcactaatgtggcaataaaaacaac |
100 |
Q |
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| T |
32818474 |
attcggaaagcataagtttgtttaattgcaatatactagtgagcaaaaatataaacaagaaattacgaacacatggcactaatgtggcaataaaaacaac |
32818375 |
T |
|
| Q |
101 |
gacaaggtctaaagtgcatttgcaattaagtggtaaaggcacacctctgattttgaccaaattagagttcacgtatgattggaattgcgtaaggcaccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32818374 |
gacaaggtctaaagtgcatttgcaattaagtggtaaaggcacacctctgattttgaccaaattagagttcacgtatgattggaattgcgtaaggcaccca |
32818275 |
T |
|
| Q |
201 |
aatctcgcctcccaagtcccaatgtcttttttacatggttccttcgatactacaaattgttgacttgacatgcgtttaacaatttgtggctgcaaaaaga |
300 |
Q |
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| T |
32818274 |
aatctcgcctcccaagtcccaatgtcttttttacatggttccttcgatactacaaattgttgacttgacatgcgtttaacaatttgtggctgcaaaaaga |
32818175 |
T |
|
| Q |
301 |
gactcgtaccatttaataaagcttatcacaaaaagatgttaatagaacaagtatgtggtatatggctaatcgtgaagtggttactatgaaactgaacctg |
400 |
Q |
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| T |
32818174 |
gactcgtaccatttaataaagcttatcacaaaaagatgttaatagaacgagtatgtggtatatggctaatcgtgaagtggttactatgaaactgaacctg |
32818075 |
T |
|
| Q |
401 |
cttaattaaaataagatgttgtaaatcacaagcagtataaatactattgaaagtacaattgaatttacctcttcaacttttgtcgggtaatgcaaacatt |
500 |
Q |
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| T |
32818074 |
cttaattaaaataagatgttgtaaatcacaagcagtataaatactattgaaagtacaattgaatttacctcttcaacttttgtcgg-------------- |
32817989 |
T |
|
| Q |
501 |
gatatgtgaaactaaaacctcatggcaatagcaggtatgtattataacctagattgaacgagtttacgaggcaagttttaggccctttcatgtgcatcat |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32817988 |
---atgtgaaactaaaacctcatggcaatagcaggtatgtattataagctagattgaacgagtttaccaggcaagttttaggccctttcatgtgcatcat |
32817892 |
T |
|
| Q |
601 |
gaaacaaattgcatttcatatggactagcattatccgcaaggccagcaatgacgttgttccaagatacaagatctggttccagtattggataaatcactt |
700 |
Q |
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| T |
32817891 |
gaaacaaattgcatttcatatggactagcattatccgcaaggccagcaatgacgttgttccaagatacaagatctggttccagtattggataaatcactt |
32817792 |
T |
|
| Q |
701 |
tcatgacaccaccatttaaaccttgtttagcatgtcccaaatgaaggtgttccatgaagtagaacttaaatgggatttcatagaaaactgaaaactcatg |
800 |
Q |
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| T |
32817791 |
tcacgacaccaccatttaaaccttgtttagcatgtcccaaatgaaggtgttccatgaagtagaacttaaatgggatttcatagaaaactgaaaactcatg |
32817692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 762
Target Start/End: Complemental strand, 32815901 - 32815762
Alignment:
| Q |
624 |
actagcattatccgcaaggccagcaatgacgttgttccaagatacaagatctggttccagtattggataaatcactttcatgacaccaccatttaaacct |
723 |
Q |
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|||||||||||| |||| |||||||||| | ||||||||||||||| ||| |||||| | ||| || || || |||||| || || || | |||||| |
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| T |
32815901 |
actagcattatctacaagaccagcaatgatgctgttccaagatacaatatccggttccggcattttatcaaacagtttcatcgcatcatcaatcaaacct |
32815802 |
T |
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| Q |
724 |
tgtttagcatgtccc-aaatgaaggtgttccatgaagtag |
762 |
Q |
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| T |
32815801 |
tgttttgcataccccaaaatgagtgtgttccatgaagtag |
32815762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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