View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_low_11 (Length: 461)
Name: NF7073_low_11
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 45952176 - 45952616
Alignment:
| Q |
15 |
aatactagtagaggtatatataggacaaggagaccctcaatctctctacatttttgttatttgcatggacaaacattcacacatgacaaccgatgtatag |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45952176 |
aatagtagtagaggtatatataggacaaggagaccctcaatctctctacatttttgttatttgcatggacaaacattcacacatgacaaccgatgtatag |
45952275 |
T |
|
| Q |
115 |
tcaataatggtgattggaaaccaatgctttgtagaaatggccctcactcctcacatt---------atgtttgaagacaa-ttattcttctttttgctga |
204 |
Q |
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| T |
45952276 |
tcaataacggtgattggaaaccaatgctttgtagaaatggccctcactcctcacatttctcacattatgtttgaagacaaattattcttctttttgctga |
45952375 |
T |
|
| Q |
205 |
agctagcaccacccgtatgagttaaatcatccacattatacaatacttttataatattaagggatacaactcttccaaagaaaatataattcttgttcaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45952376 |
agctagcaccacccgtatgagttaaatcatccacattatacaatacttttataatattaagggatacaactcttccaaagaaaatataattcttgtacaa |
45952475 |
T |
|
| Q |
305 |
gtttgaatccgcaatccaatgataacattccaccagcatgataaattgtagacaaaaacattcattctatgtgaaatagtaaaaactgaaagaagagtaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45952476 |
gtttgaatccgcaatccaatgataacattccaccagcatgataaattgtagacaaaaacattcattctatgtgaaatagtaaaaactgaaagaagattaa |
45952575 |
T |
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| Q |
405 |
ttgataataatcacacactaacaagactcttgccaagaatt |
445 |
Q |
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| T |
45952576 |
ttgataataatcacacactaacaagactcttgccaagaatt |
45952616 |
T |
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