View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7073_low_13 (Length: 449)

Name: NF7073_low_13
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7073_low_13
NF7073_low_13
[»] chr5 (1 HSPs)
chr5 (18-442)||(39252497-39252911)
[»] chr1 (3 HSPs)
chr1 (111-164)||(35201495-35201548)
chr1 (111-164)||(35202375-35202428)
chr1 (116-164)||(37643843-37643891)
[»] chr3 (2 HSPs)
chr3 (113-167)||(47007765-47007819)
chr3 (113-164)||(47007023-47007074)
[»] chr2 (4 HSPs)
chr2 (122-166)||(29308399-29308443)
chr2 (122-166)||(29309102-29309146)
chr2 (111-166)||(4161336-4161390)
chr2 (122-166)||(29283910-29283954)
[»] chr8 (2 HSPs)
chr8 (111-164)||(33520893-33520946)
chr8 (122-164)||(33520216-33520258)
[»] chr6 (1 HSPs)
chr6 (111-166)||(4275070-4275125)
[»] scaffold0143 (1 HSPs)
scaffold0143 (122-164)||(1625-1667)


Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 39252497 - 39252911
Alignment:
Q  18 catcacgtgaaagtcagattatgagggagtattattattagagaaagttagagtttaattccgataggctaatgtgtaaactgccttacgctgttatgaa 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252497 catcacgtgaaagtcagattatgagggagtattactattagagaaagttagagtttaattccgataggctaatgtgtaaactgccttacgctgttatgaa 39252596  T
Q  118 aggtaattgagatggccatttcctccctaaatggagaggatctgcactcaatgaggagatagtcaacccataaaaataggaaatatctatgttttaattt 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252597 aggtaattgagatggccatttcctcccaaaatggagaggatctgcactcaatgaggagatagtcaacccataaaaataggaaatatctatgttttaattt 39252696  T
Q  218 aggggcgtctatataatgaaagtgagtgaatgaattgagagaaatcggtggtaactaacgatggcggcatcaccatccttttgtcatagaaggagcagat 317  Q
    |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252697 a----------tataatgaaagtgagtgaatgaattgagagaaatcggtggtaactaacgatggcggcatcaccatccttttgtcatagaaggagcagat 39252786  T
Q  318 catcgaattttcaaacaagaatgatggcagaagcatgttcatatttaccagagtttaccagaggagttataggaatgcatcttgaaattccacaacgcag 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39252787 catcgaattttcaaacaagaatgatggcagaagcatgttcatatttaccagagtttaccagaggagttatgggaatgcatcttgaaattccacaacgcag 39252886  T
Q  418 acaatcacactttgatgtccatctc 442  Q
    ||||||||||||||| |||| ||||    
T  39252887 acaatcacactttgaagtccgtctc 39252911  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 35201548 - 35201495
Alignment:
Q  111 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 164  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  35201548 ttatgaaaggaaattgagatggccatttactccccaaatggagaggatctgcac 35201495  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 35202375 - 35202428
Alignment:
Q  111 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 164  Q
    |||||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  35202375 ttatgaaaggaaattgagatggccatttcctcaccaaatggagaggatctgcac 35202428  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 37643843 - 37643891
Alignment:
Q  116 aaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 164  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||| |||||    
T  37643843 aaaggaaattgagattgtcattttctccctaaatggagaggatatgcac 37643891  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 47007765 - 47007819
Alignment:
Q  113 atgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactca 167  Q
    ||||| || ||||||||| || |||||||||||||||||||||||||||||||||    
T  47007765 atgaatggaaattgagattgcaatttcctccctaaatggagaggatctgcactca 47007819  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 47007074 - 47007023
Alignment:
Q  113 atgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 164  Q
    ||||| || ||||||||| || ||||||||||||||||||||||||||||||    
T  47007074 atgaatggaaattgagattgcaatttcctccctaaatggagaggatctgcac 47007023  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 29308399 - 29308443
Alignment:
Q  122 aattgagatggccatttcctccctaaatggagaggatctgcactc 166  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  29308399 aattgagattgcaatttcctccctaaatggagaggatctgcactc 29308443  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 29309146 - 29309102
Alignment:
Q  122 aattgagatggccatttcctccctaaatggagaggatctgcactc 166  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  29309146 aattgagattgcaatttcctccctaaatggagaggatctgcactc 29309102  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 4161336 - 4161390
Alignment:
Q  111 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactc 166  Q
    |||||||||| ||||||||| || ||||| |||| |||||||||||||||||||||    
T  4161336 ttatgaaaggaaattgagattgcaatttc-tccccaaatggagaggatctgcactc 4161390  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 29283910 - 29283954
Alignment:
Q  122 aattgagatggccatttcctccctaaatggagaggatctgcactc 166  Q
    |||| |||| || |||||||||||||||||||||||||| |||||    
T  29283910 aatttagattgcaatttcctccctaaatggagaggatctacactc 29283954  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 33520893 - 33520946
Alignment:
Q  111 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 164  Q
    |||| ||||| ||||| ||||||||||||||| | |||||||||||||||||||    
T  33520893 ttattaaaggaaattgtgatggccatttcctcaccaaatggagaggatctgcac 33520946  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 33520258 - 33520216
Alignment:
Q  122 aattgagatggccatttcctccctaaatggagaggatctgcac 164  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  33520258 aattgagatggccatttcctcataaaatggagaggatctgcac 33520216  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 4275125 - 4275070
Alignment:
Q  111 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactc 166  Q
    ||||||| || ||||||||| ||||||| || ||||||||||||||||||| ||||    
T  4275125 ttatgaatggaaattgagattgccattttctacctaaatggagaggatctgtactc 4275070  T

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Target: scaffold0143 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 1667 - 1625
Alignment:
Q  122 aattgagatggccatttcctccctaaatggagaggatctgcac 164  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  1667 aattgagatggccatttcctcataaaatggagaggatctgcac 1625  T

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