View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_low_17 (Length: 411)
Name: NF7073_low_17
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_17 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Complemental strand, 35616953 - 35616556
Alignment:
| Q |
14 |
acatcaaatgccacttttttatatatttctgatctctctcctgcactccatatgccacactagtagtactaccaggtttaggctcttcttgtgtagcact |
113 |
Q |
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| T |
35616953 |
acatcaaatgccacttttttatatatttctgatctctttcttgcactccatatgccacactagtagtactaccaggtttaggctcttcttgtgtagaact |
35616854 |
T |
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| Q |
114 |
cttctgcagcacttcatagtctgtaaccatatgcttgtcttttgttgaagtgtcgcattcattaactgtggatggtggagcatcgtgcgatttaaaaggt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35616853 |
cttctgcagcacttcatagtctgtaaccatatgcttgtctttggttgaagtgtcgcattcattaactgtggatggtggagcatcgtgcggcttaaaaggt |
35616754 |
T |
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| Q |
214 |
gatgattccattgacacatttttcacattctgctgagagttaccatcttcactgtggacagttttggttttctgagtacctttccttgcattaccaactt |
313 |
Q |
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| T |
35616753 |
gatgattccattgacacatttttcacattctgctgagagttaccatcttcactgtggacagttttggttttctgagtacctttccttgcattaccaactt |
35616654 |
T |
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| Q |
314 |
gctttgatctgccatcctttttcgtggacttttgtgacttcaactgacgtctcctcatcgacacaaagcgcttcaacggaggaagatcaccatggtga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35616653 |
gctttgatctgccatcctttttcgtggacttttgtgacttcaactgacgtctcctcatcgacacaaagcgcttcaacggaggaagatcaccatggtga |
35616556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 28 - 411
Target Start/End: Original strand, 28438050 - 28438436
Alignment:
| Q |
28 |
ttttttatatatttctgatctctctcctgcactccatatgccacactagtagtactaccaggtttaggctcttcttgtgtagcactcttctgcagcactt |
127 |
Q |
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| T |
28438050 |
ttttttatatatttctgatctctttcctgcactccatatgccacactagtagcactaccaggtttaggctcttcttgtgcaaaattcttctgcagcactt |
28438149 |
T |
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| Q |
128 |
catagtctgtaaccatatgcttgtcttttgttgaagtgtcgcattcattaactgtggatggtggagcatcgtgcgatttaaaaggtgatgattccattga |
227 |
Q |
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|||| |||| |||||| ||| |||| ||||||||||| |||||||||||||||||||| |||| ||| || | |||||||| |||| ||| | | |
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| T |
28438150 |
cataatctggctccatattcttccctttagttgaagtgtcacattcattaactgtggatggaggagtatcatgaggcttaaaaggcgatgtttctctagc |
28438249 |
T |
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| Q |
228 |
cacatttttcacattctg---ctgagagttaccatcttcactgtggacagttttggttttctgagtacctttccttgcattaccaacttgctttgatctg |
324 |
Q |
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| T |
28438250 |
cacatttttcacattctgaacttgagagttaccttcttcgctgtggacagttttgttaatctgagtggctttccttgcattaccaatttgctttgatctt |
28438349 |
T |
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| Q |
325 |
ccatcctttttcgtggacttttgtgacttcaactgacgtctcctcatcgacacaaagcgcttcaacggaggaagatcaccatggtga |
411 |
Q |
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||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||| |
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| T |
28438350 |
ccatccttttttgtggacttctgtgtcttcaactgacgtcttctcatcgacacaaagcgcttcaacggaggcaaatcaccgtggtga |
28438436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 35617985 - 35617915
Alignment:
| Q |
14 |
acatcaaatgccacttttttatatatttctgatctctctcctgcactccatatgccacactagtagtacta |
84 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |
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| T |
35617985 |
acatcaaatgccacttttttatatatttctgatctctttcctgcactccatatggcacatcagtagtacta |
35617915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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