View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7073_low_2 (Length: 791)

Name: NF7073_low_2
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7073_low_2
NF7073_low_2
[»] chr7 (5 HSPs)
chr7 (8-521)||(12543514-12544029)
chr7 (588-646)||(12543375-12543433)
chr7 (723-778)||(7744645-7744700)
chr7 (719-770)||(12543251-12543302)
chr7 (584-646)||(7744506-7744568)
[»] chr3 (2 HSPs)
chr3 (56-185)||(53018277-53018406)
chr3 (592-646)||(53281561-53281616)
[»] chr1 (4 HSPs)
chr1 (47-184)||(16501803-16501940)
chr1 (95-160)||(23723477-23723542)
chr1 (39-112)||(24432975-24433048)
chr1 (39-112)||(24430928-24431001)
[»] chr8 (2 HSPs)
chr8 (592-646)||(1080879-1080933)
chr8 (588-646)||(24917449-24917507)
[»] chr5 (3 HSPs)
chr5 (588-641)||(11893735-11893788)
chr5 (588-641)||(28086278-28086331)
chr5 (95-146)||(24658228-24658279)
[»] chr2 (1 HSPs)
chr2 (588-641)||(562179-562232)
[»] chr6 (4 HSPs)
chr6 (600-646)||(15339447-15339493)
chr6 (39-112)||(17452024-17452097)
chr6 (588-641)||(33846143-33846196)
chr6 (588-641)||(33847182-33847235)


Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 521
Target Start/End: Complemental strand, 12544029 - 12543514
Alignment:
Q  8 atggacatcataagttgtaagtatagactcggaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12544029 atggacatcataagttgtaagtatagactcggaagaattgggacgagattgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatc 12543930  T
Q  108 aagtgtccgactgtcatacaatatcgacaacaatttgaaataatatgaccctttttcaaacaattatagcattcaacagtgaacaatcgaagaaagaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12543929 aagtgtccgactgtcatacaatatcgacaacaatttgaaataatatgaccctttttcaaacaattatagcattcagcagtgaacaatcgaagaaagaatg 12543830  T
Q  208 cccaagctaacatcaatgacggcaaaatttggtagtcgatacaacactgaatttctccattaaaacataataaggttcaataaggattgagaaacataca 307  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543829 cccaagctaacaacaatgacggcaaaatttggtagtcgatacaacactgaatttctccattaaaacataataaggttcaataaggattgagaaacataca 12543730  T
Q  308 ataaacaccaccaccgctaagccatatttgctggaaacaaaaattgtataaaatagaaggatctcatccaaatattacatgaaggaacacattgtaacaa 407  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543729 ataaacaccaccaccgataagccatatttgctggaaacaaaaattgtataaaatagaaggatctcatccaaatattacatgaaggaacacattgtaacaa 12543630  T
Q  408 agggaattaagtgccttaaaatttgaaatgacagctggagaaaagtaccgaacaa--gatatggcggagccttaagcaaactgatgaatatataactact 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||     
T  12543629 agggaattaagtgccttaaaatttgaaatgacagctggagaaaagtaccgaacaagggatatggcggagccttaagcaaactgatgaatatataactacc 12543530  T
Q  506 ggtggatagaggcgct 521  Q
    ||||||||||||||||    
T  12543529 ggtggatagaggcgct 12543514  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 588 - 646
Target Start/End: Complemental strand, 12543433 - 12543375
Alignment:
Q  588 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 646  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543433 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 12543375  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 723 - 778
Target Start/End: Original strand, 7744645 - 7744700
Alignment:
Q  723 caccaccactggctgccgctacattcttgcccttcgccccacccctctctttgatg 778  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7744645 caccaccactggctgccgctgcattcttgcccttcgccccacccctctctttgatg 7744700  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 719 - 770
Target Start/End: Complemental strand, 12543302 - 12543251
Alignment:
Q  719 ccgccaccaccactggctgccgctacattcttgcccttcgccccacccctct 770  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543302 ccgccaccaccactggctgccgctacattcttgcccttcgccccacccctct 12543251  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 646
Target Start/End: Original strand, 7744506 - 7744568
Alignment:
Q  584 gatccatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 646  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7744506 gatctatgtacaccccaatatacaccccttatgtggcatgggtattttggaaatttcacacag 7744568  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 53018277 - 53018406
Alignment:
Q  56 ttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaaataatatga 155  Q
    |||||||  ||| |||||||| ||| |||||||||||| |||||| ||||||||||| ||| ||||| | || |||||||||||||||||| ||||||||    
T  53018277 ttgattccgattttgatcagaccgtggaggacgagtgagacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagtaatatga 53018376  T
Q  156 ccctttttcaaacaattatagcattcaaca 185  Q
    ||||||||||  || ||||| |||||||||    
T  53018377 ccctttttcatgcagttataacattcaaca 53018406  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 646
Target Start/End: Complemental strand, 53281616 - 53281561
Alignment:
Q  592 tacacccccatatacaaccc-ttatgtggcatgggtattttggaaatttcaaacag 646  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  53281616 tacacccccatatacacccccttatgtggcatgggtattttggaaatttcacacag 53281561  T

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Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 16501940 - 16501803
Alignment:
Q  47 gggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaa 146  Q
    ||||||| |||||||| |||| |||||| ||||| ||||| |||||  |||||| |||||||| |||  | ||||| | || ||||||||||||||||||    
T  16501940 gggacgaagttgattcctattttgatcaaatcgtggaggatgagtgggacaattttgaatcaaatgtttggctgtcttgcagtatcgacaacaatttgaa 16501841  T
Q  147 ataatatgaccctttttcaaacaattatagcattcaac 184  Q
      |||||||||||||||||| |||||||| ||||||||    
T  16501840 gcaatatgaccctttttcaagcaattataacattcaac 16501803  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 23723542 - 23723477
Alignment:
Q  95 acaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaaataatatgaccctt 160  Q
    |||||| ||||||||||||||||||||| |||||||| | ||||||||||||  ||||||||||||    
T  23723542 acaattttgaatcaagtgtccgactgtcttacaatattggcaacaatttgaagaaatatgaccctt 23723477  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 24432975 - 24433048
Alignment:
Q  39 gaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtg 112  Q
    |||||||| ||||||||||||||| | ||||||| || |||| |||||||||||   ||||| |||||||||||    
T  24432975 gaagaattaggacgaggttgattcttgttctgattaggtcgtggaggacgagtggggcaattttgaatcaagtg 24433048  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 24431001 - 24430928
Alignment:
Q  39 gaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtg 112  Q
    |||||||| ||||||||||||||| | ||||||| || |||| ||||| |||||   ||||| |||||||||||    
T  24431001 gaagaattaggacgaggttgattcttgttctgattaggtcgtggaggaagagtggggcaattttgaatcaagtg 24430928  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 592 - 646
Target Start/End: Original strand, 1080879 - 1080933
Alignment:
Q  592 tacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 646  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  1080879 tacacccccatatacaccccttatgtggcatgggtattttggaaatttcacacag 1080933  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 588 - 646
Target Start/End: Original strand, 24917449 - 24917507
Alignment:
Q  588 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 646  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  24917449 catgtacatccccatatacaccccttatgtggcatgggtattttggaaatttcacacag 24917507  T

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Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 588 - 641
Target Start/End: Original strand, 11893735 - 11893788
Alignment:
Q  588 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 641  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  11893735 catgtacaccctcatatacaccccttatgtggcatgggtattttggaaatttca 11893788  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 588 - 641
Target Start/End: Complemental strand, 28086331 - 28086278
Alignment:
Q  588 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 641  Q
    ||||||||||  |||||||| ||||||||||||||||||||||| |||||||||    
T  28086331 catgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttca 28086278  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 24658279 - 24658228
Alignment:
Q  95 acaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaa 146  Q
    |||||| ||||||||||| || |||||| |||||||||||||||||||||||    
T  24658279 acaattttgaatcaagtgcccaactgtcttacaatatcgacaacaatttgaa 24658228  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 588 - 641
Target Start/End: Original strand, 562179 - 562232
Alignment:
Q  588 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 641  Q
    ||||||||||  |||||||| ||||||||||||||||||||||| |||||||||    
T  562179 catgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttca 562232  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 646
Target Start/End: Original strand, 15339447 - 15339493
Alignment:
Q  600 catatacaacccttatgtggcatgggtattttggaaatttcaaacag 646  Q
    |||||||| || |||||||||||||||||||||||||||||| ||||    
T  15339447 catatacacccgttatgtggcatgggtattttggaaatttcacacag 15339493  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 17452024 - 17452097
Alignment:
Q  39 gaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtg 112  Q
    |||||||| ||||||||||||||| | ||||||| || |||| |||||||||||   ||||| |||||||||||    
T  17452024 gaagaattaggacgaggttgattcttgttctgattaggtcgtggaggacgagtggggcaattttgaatcaagtg 17452097  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 641
Target Start/End: Original strand, 33846143 - 33846196
Alignment:
Q  588 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 641  Q
    ||||||||||  |||||||| | ||||||||||||||||||||| |||||||||    
T  33846143 catgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttca 33846196  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 641
Target Start/End: Complemental strand, 33847235 - 33847182
Alignment:
Q  588 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 641  Q
    ||||||||||  |||||||| | ||||||||||||||||||||| |||||||||    
T  33847235 catgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttca 33847182  T

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