View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7073_low_20 (Length: 371)
Name: NF7073_low_20
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 349
Target Start/End: Original strand, 14175842 - 14176184
Alignment:
| Q |
7 |
ttggtggtagcagatattttgtgacgtttattgatgatgcttccagaaaggtgtgggtttacttccttaaaagtaaggatcaggtgtttcagtacttcaa |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14175842 |
ttggtggtagcagatattttgtgacgtttattgatgatgcttcaagaaaggtgtgggtgtacttccttaaaagtaaggatcaggtgtttcagtacttcaa |
14175941 |
T |
|
| Q |
107 |
aaggtttcatgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgttcggataatgggggtgaatatacttcccatgaatttaaaagttat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14175942 |
aaggtttcatgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgttcggataatgggggtgaatatacttcccatgaatttaaaagttat |
14176041 |
T |
|
| Q |
207 |
tgttctgagcacggcatcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176042 |
tgttctgagcacggcatcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtga |
14176141 |
T |
|
| Q |
307 |
gatgtatgctgaaaatggctaagctgccaaagccattttgggg |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14176142 |
gatgtatgctgaaaatggctaagctgccaaagccattttgggg |
14176184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 349
Target Start/End: Complemental strand, 28610036 - 28609693
Alignment:
| Q |
7 |
ttggtggtagcagatattttgtgacgttt-attgatgatgcttccagaaaggtgtgggtttacttccttaaaagtaaggatcaggtgtttcagtacttca |
105 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
28610036 |
ttggtggtagcagatattttgtgacgttttattgatgatgcttcaagaaaggtgtgggtgtacttccttaaaagtaaggatcgggtgtttcagtacttca |
28609937 |
T |
|
| Q |
106 |
aaaggtttcatgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgttcggataatgggggtgaatatacttcccatgaatttaaaagtta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609936 |
aaaggtttcatgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgttcggataatgggggtgaatatacttcccatgaatttaaaagtta |
28609837 |
T |
|
| Q |
206 |
ttgttctgagcacggcatcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtg |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609836 |
ttgttctgagcacggcatcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtg |
28609737 |
T |
|
| Q |
306 |
agatgtatgctgaaaatggctaagctgccaaagccattttgggg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28609736 |
agatgtatgctgaaaatggctaagctgccaaagccattttgggg |
28609693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 348
Target Start/End: Original strand, 12932572 - 12932913
Alignment:
| Q |
7 |
ttggtggtagcagatattttgtgacgtttattgatgatgcttccagaaaggtgtgggtttacttccttaaaagtaaggatcaggtgtttcagtacttcaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12932572 |
ttggtggtagcagatattttgtgacgtttattgatgatgcttcaagaaaggtgtgggtgtacttccttaaaagtaaggatcaggtgtttcagtaattcaa |
12932671 |
T |
|
| Q |
107 |
aaggtttcatgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgttcggataatgggggtgaatatacttcccatgaatttaaaagttat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12932672 |
aaggtttcatgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgttcggataatgggggtgaatatacttcccatgaatttaaaagttat |
12932771 |
T |
|
| Q |
207 |
tgttctgagcacggcatcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtga |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12932772 |
tgttctgagcacgacatcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtga |
12932871 |
T |
|
| Q |
307 |
gatgtatgctgaaaatggctaagctgccaaagccattttggg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12932872 |
gatgtatgctgaaaatggctaagctgccaaagccattttggg |
12932913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 15298362 - 15298707
Alignment:
| Q |
7 |
ttggtggtagcagatattttgtgacgtttattgatgatgcttccagaaaggtgtgggtttacttccttaaaagtaaggatcaggtgtttcagtacttcaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
15298362 |
ttggtggtagcagatattttgtgacgtttattaatgatacttccagaaaggtgtgggtgtacttccttaaaagtaaggatcaagtgtttcagtacttcaa |
15298461 |
T |
|
| Q |
107 |
aaggtttcatgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgttcggataatgggggtgaatatacttcccatgaatttaaaagttat |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15298462 |
aaggtttcatgcgatggtggagagagcgactggtaaatctttgaagtgtcttcattcggataatgggggtgaatatacttcccatgaatttaaaagttat |
15298561 |
T |
|
| Q |
207 |
tgttctgagcacggcatcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtga |
306 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15298562 |
tgttttgagcacgacatcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacataaccattatggagaaagtga |
15298661 |
T |
|
| Q |
307 |
gatgtatgctgaaaatggctaagctgccaaagccattttggggtga |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15298662 |
gatgtatgctgaaaatggctaagctgccaaagccattttggggtga |
15298707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 38995687 - 38995353
Alignment:
| Q |
7 |
ttggtggtagcagatattttgtgacgtttattgatgatgcttccagaaaggtgtgggtttacttccttaaaagtaaggatcaggtgtttcagtacttcaa |
106 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||| || |||| || | ||||||| ||||| |||| || ||||| || ||||||| |
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| T |
38995687 |
ttggtggtagcaaatattttgtgatgtttattgatgatgcttccacaatggtgcggttgtacttccataaaatcaaggcg-agatgttttaggacttcaa |
38995589 |
T |
|
| Q |
107 |
aaggtttcatgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgttcggataatgggggtgaatatacttcccatgaatttaaaagttat |
206 |
Q |
| |
|
|| |||||| ||||||||||||| ||||| ||||| ||||||||||| || |||||||||||||||||||| || ||||||||||||||| ||| |
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|
| T |
38995588 |
aatatttcatatgatggtggagagagcgactagtaaacctttgaagtgtatttgttcggataatgggggtgaacat----cccatgaatttaaaaaatat |
38995493 |
T |
|
| Q |
207 |
tgttctgagcacggcatcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtga |
306 |
Q |
| |
|
| || | |||| |||| |||||||||||||||| | || ||||||| |||| ||||||||| | ||||||||||||| ||||||||| |||||| | | |
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|
| T |
38995492 |
tattttaagcagggcaccagacatgagaagacgttatctaacaccccataacaaaatggtgtaacagaaagaatcaacaaaaccattatagagaaaatta |
38995393 |
T |
|
| Q |
307 |
gatgtatgctgaaaatggctaagctgccaaagccattttg |
346 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
38995392 |
gatgtatgctgaaaatggctaagttgcctaagccattttg |
38995353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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