View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7073_low_26 (Length: 314)

Name: NF7073_low_26
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7073_low_26
NF7073_low_26
[»] chr8 (34 HSPs)
chr8 (78-289)||(6296617-6296828)
chr8 (156-275)||(5033187-5033306)
chr8 (162-275)||(5667123-5667236)
chr8 (156-275)||(33841584-33841703)
chr8 (156-275)||(35440962-35441081)
chr8 (156-273)||(4958627-4958743)
chr8 (171-274)||(10086784-10086887)
chr8 (153-284)||(39850972-39851103)
chr8 (162-275)||(45191126-45191239)
chr8 (190-284)||(34541830-34541924)
chr8 (190-263)||(34229679-34229752)
chr8 (190-263)||(8796460-8796533)
chr8 (201-263)||(8243426-8243488)
chr8 (156-224)||(5667090-5667158)
chr8 (152-225)||(34229630-34229703)
chr8 (153-225)||(43844545-43844617)
chr8 (228-275)||(43844534-43844581)
chr8 (190-240)||(31159912-31159962)
chr8 (239-288)||(8243401-8243450)
chr8 (239-275)||(5033237-5033273)
chr8 (239-275)||(35440995-35441031)
chr8 (1-32)||(6296874-6296905)
chr8 (231-273)||(2581853-2581895)
chr8 (242-288)||(36766177-36766223)
chr8 (239-288)||(34229717-34229766)
chr8 (239-288)||(34541816-34541865)
chr8 (247-275)||(1880264-1880292)
chr8 (239-275)||(5667173-5667209)
chr8 (239-275)||(8796498-8796534)
chr8 (162-214)||(10086756-10086808)
chr8 (239-275)||(10086833-10086869)
chr8 (239-275)||(33841617-33841653)
chr8 (190-238)||(37618754-37618802)
chr8 (239-275)||(39851031-39851067)
[»] chr2 (27 HSPs)
chr2 (156-288)||(38933600-38933732)
chr2 (162-288)||(6217223-6217349)
chr2 (156-275)||(6721977-6722096)
chr2 (190-288)||(2828597-2828695)
chr2 (165-288)||(14229355-14229477)
chr2 (156-275)||(16514450-16514569)
chr2 (162-285)||(37961722-37961845)
chr2 (191-288)||(2893976-2894073)
chr2 (173-286)||(29925580-29925693)
chr2 (153-264)||(14470582-14470693)
chr2 (156-264)||(14892298-14892405)
chr2 (165-275)||(29508692-29508803)
chr2 (189-275)||(15011306-15011392)
chr2 (153-273)||(8534174-8534288)
chr2 (166-271)||(24115950-24116055)
chr2 (234-288)||(2143943-2143997)
chr2 (189-263)||(37762027-37762101)
chr2 (239-288)||(15011356-15011405)
chr2 (153-234)||(32545855-32545936)
chr2 (152-274)||(1945401-1945517)
chr2 (239-288)||(37762014-37762063)
chr2 (242-282)||(2828663-2828703)
chr2 (239-275)||(16514500-16514536)
chr2 (238-275)||(565335-565372)
chr2 (239-288)||(2894039-2894088)
chr2 (239-288)||(14464568-14464617)
chr2 (189-230)||(14464581-14464622)
[»] chr7 (28 HSPs)
chr7 (156-288)||(42628308-42628440)
chr7 (156-275)||(11016895-11017014)
chr7 (156-263)||(4290583-4290690)
chr7 (190-288)||(29053341-29053439)
chr7 (190-277)||(7671938-7672025)
chr7 (182-275)||(15027568-15027661)
chr7 (190-275)||(41018255-41018340)
chr7 (165-263)||(38975843-38975941)
chr7 (190-288)||(4649333-4649433)
chr7 (162-269)||(48000769-48000876)
chr7 (201-275)||(27028831-27028905)
chr7 (190-275)||(34854722-34854807)
chr7 (206-274)||(10419485-10419553)
chr7 (220-275)||(22764757-22764812)
chr7 (239-289)||(41018240-41018290)
chr7 (221-275)||(45231908-45231962)
chr7 (162-238)||(48000693-48000769)
chr7 (253-288)||(45231867-45231902)
chr7 (153-263)||(41945893-41946003)
chr7 (239-288)||(34854708-34854757)
chr7 (239-275)||(15027618-15027654)
chr7 (213-273)||(30217504-30217564)
chr7 (245-284)||(30165329-30165368)
chr7 (242-288)||(27028806-27028852)
chr7 (239-288)||(4649398-4649447)
chr7 (234-275)||(27028754-27028795)
chr7 (239-288)||(29053327-29053376)
chr7 (239-275)||(11016945-11016981)
[»] chr5 (35 HSPs)
chr5 (156-288)||(3899852-3899984)
chr5 (156-288)||(16971157-16971289)
chr5 (156-275)||(29699393-29699512)
chr5 (172-288)||(26662412-26662529)
chr5 (172-288)||(26934007-26934124)
chr5 (156-288)||(2093930-2094062)
chr5 (160-288)||(28818930-28819058)
chr5 (156-288)||(2953211-2953335)
chr5 (162-275)||(19655184-19655297)
chr5 (156-275)||(291123-291242)
chr5 (160-275)||(12913829-12913944)
chr5 (199-287)||(38134409-38134497)
chr5 (156-263)||(30117821-30117928)
chr5 (201-275)||(16439164-16439238)
chr5 (156-288)||(2356288-2356416)
chr5 (189-278)||(16802467-16802556)
chr5 (208-275)||(3180105-3180172)
chr5 (239-288)||(16439214-16439263)
chr5 (190-275)||(19598358-19598442)
chr5 (152-218)||(1638446-1638512)
chr5 (239-288)||(3180073-3180122)
chr5 (152-225)||(16439127-16439200)
chr5 (239-288)||(19598408-19598456)
chr5 (239-275)||(2093963-2093999)
chr5 (239-275)||(3899915-3899951)
chr5 (240-284)||(16802521-16802565)
chr5 (239-275)||(16971220-16971256)
chr5 (212-275)||(39031200-39031263)
chr5 (156-234)||(14167146-14167223)
chr5 (153-274)||(2935826-2935941)
chr5 (255-288)||(6912355-6912388)
chr5 (156-225)||(12913796-12913865)
chr5 (239-275)||(2953266-2953302)
chr5 (239-275)||(19655234-19655270)
chr5 (239-275)||(29699443-29699479)
[»] chr4 (42 HSPs)
chr4 (156-288)||(42375023-42375155)
chr4 (156-275)||(47661868-47661987)
chr4 (156-275)||(23444262-23444381)
chr4 (166-280)||(53954631-53954745)
chr4 (156-275)||(6271728-6271847)
chr4 (190-292)||(40789188-40789290)
chr4 (156-275)||(51265471-51265590)
chr4 (190-288)||(52028562-52028660)
chr4 (189-288)||(55090022-55090121)
chr4 (190-288)||(47404612-47404710)
chr4 (166-275)||(35682192-35682301)
chr4 (175-274)||(47762635-47762734)
chr4 (190-288)||(24006097-24006187)
chr4 (212-275)||(30861823-30861886)
chr4 (153-272)||(44379959-44380078)
chr4 (182-288)||(38714836-38714942)
chr4 (190-248)||(50384132-50384190)
chr4 (190-273)||(26186043-26186124)
chr4 (190-288)||(31430488-31430583)
chr4 (242-288)||(31430474-31430520)
chr4 (201-275)||(31532727-31532801)
chr4 (239-288)||(50384118-50384167)
chr4 (151-217)||(43063506-43063572)
chr4 (239-288)||(47404598-47404647)
chr4 (239-287)||(52028625-52028673)
chr4 (177-248)||(25818387-25818458)
chr4 (162-225)||(30861850-30861913)
chr4 (239-288)||(24006083-24006132)
chr4 (191-252)||(28693951-28694012)
chr4 (239-288)||(40789255-40789304)
chr4 (239-288)||(55090009-55090058)
chr4 (239-275)||(23444295-23444331)
chr4 (208-248)||(45591455-45591495)
chr4 (239-275)||(47661918-47661954)
chr4 (248-288)||(54716362-54716402)
chr4 (240-278)||(17285807-17285845)
chr4 (239-288)||(28693936-28693985)
chr4 (243-288)||(55089890-55089935)
chr4 (239-275)||(6271778-6271814)
chr4 (239-275)||(35682242-35682278)
chr4 (239-275)||(42375086-42375122)
chr4 (239-275)||(51265521-51265557)
[»] chr1 (57 HSPs)
chr1 (156-275)||(48993910-48994029)
chr1 (156-288)||(15220824-15220956)
chr1 (166-274)||(17127567-17127675)
chr1 (191-288)||(46333974-46334071)
chr1 (171-275)||(32540756-32540860)
chr1 (153-288)||(29371381-29371516)
chr1 (162-271)||(5995399-5995508)
chr1 (190-275)||(37155072-37155157)
chr1 (156-275)||(29179590-29179709)
chr1 (190-288)||(8337878-8337976)
chr1 (156-288)||(49444906-49445036)
chr1 (162-288)||(33219586-33219712)
chr1 (190-288)||(34062222-34062320)
chr1 (190-284)||(47303412-47303506)
chr1 (190-275)||(4609022-4609107)
chr1 (190-278)||(741529-741617)
chr1 (190-288)||(38674532-38674628)
chr1 (201-275)||(1091582-1091656)
chr1 (192-275)||(45728313-45728396)
chr1 (201-271)||(9157340-9157410)
chr1 (190-280)||(48604974-48605064)
chr1 (225-275)||(21630068-21630118)
chr1 (190-275)||(44706810-44706896)
chr1 (239-292)||(1819498-1819551)
chr1 (212-275)||(36290456-36290519)
chr1 (230-275)||(28395663-28395708)
chr1 (239-286)||(34062285-34062332)
chr1 (241-288)||(48823898-48823945)
chr1 (201-247)||(1819527-1819573)
chr1 (239-288)||(4609072-4609121)
chr1 (239-288)||(19711193-19711242)
chr1 (190-243)||(28928806-28928859)
chr1 (239-288)||(46333959-46334008)
chr1 (153-225)||(17127640-17127712)
chr1 (162-225)||(37155045-37155108)
chr1 (220-278)||(5694946-5695004)
chr1 (156-225)||(28395630-28395699)
chr1 (239-288)||(28928792-28928841)
chr1 (156-225)||(32540824-32540893)
chr1 (239-284)||(37155122-37155167)
chr1 (239-288)||(38674518-38674567)
chr1 (239-275)||(33219649-33219685)
chr1 (153-225)||(36290483-36290555)
chr1 (190-274)||(48498442-48498526)
chr1 (239-275)||(48993943-48993979)
chr1 (241-288)||(9157388-9157435)
chr1 (239-274)||(17127591-17127626)
chr1 (253-288)||(36290428-36290463)
chr1 (239-284)||(741519-741564)
chr1 (240-289)||(32157602-32157651)
chr1 (239-288)||(47303471-47303520)
chr1 (239-288)||(48498491-48498539)
chr1 (239-287)||(2573169-2573217)
chr1 (239-275)||(5995445-5995481)
chr1 (153-225)||(21630032-21630104)
chr1 (239-275)||(29179623-29179659)
chr1 (239-275)||(29371444-29371480)
[»] scaffold0586 (2 HSPs)
scaffold0586 (166-275)||(7050-7159)
scaffold0586 (153-225)||(7123-7194)
[»] chr3 (34 HSPs)
chr3 (162-283)||(1801445-1801566)
chr3 (156-275)||(51046066-51046185)
chr3 (206-288)||(47677298-47677380)
chr3 (190-284)||(30476501-30476595)
chr3 (162-275)||(41752990-41753103)
chr3 (177-269)||(47492061-47492153)
chr3 (162-273)||(50524730-50524841)
chr3 (153-275)||(30734392-30734514)
chr3 (190-263)||(33689214-33689287)
chr3 (201-288)||(29031752-29031839)
chr3 (166-274)||(30580759-30580867)
chr3 (221-292)||(39385746-39385817)
chr3 (201-275)||(43139747-43139821)
chr3 (201-278)||(49418729-49418806)
chr3 (208-275)||(50550001-50550068)
chr3 (234-288)||(1801566-1801620)
chr3 (156-234)||(45103102-45103180)
chr3 (239-288)||(33689252-33689301)
chr3 (239-288)||(47677268-47677317)
chr3 (191-275)||(18321677-18321761)
chr3 (162-225)||(51046149-51046212)
chr3 (191-256)||(30904289-30904354)
chr3 (239-288)||(43139722-43139771)
chr3 (237-288)||(1272506-1272557)
chr3 (201-252)||(34060234-34060285)
chr3 (162-225)||(47492123-47492186)
chr3 (245-288)||(49414505-49414548)
chr3 (208-263)||(55223270-55223325)
chr3 (239-289)||(18321727-18321777)
chr3 (156-234)||(21024088-21024165)
chr3 (239-289)||(29031726-29031776)
chr3 (246-288)||(49418704-49418746)
chr3 (239-288)||(30476487-30476536)
chr3 (239-275)||(47492073-47492109)
[»] scaffold0016 (2 HSPs)
scaffold0016 (156-288)||(49696-49828)
scaffold0016 (239-273)||(49731-49765)
[»] chr6 (18 HSPs)
chr6 (156-288)||(24618594-24618726)
chr6 (171-288)||(12343113-12343230)
chr6 (190-288)||(10521876-10521974)
chr6 (156-256)||(13043502-13043602)
chr6 (221-284)||(31654322-31654385)
chr6 (156-275)||(17750928-17751047)
chr6 (190-275)||(551192-551277)
chr6 (201-288)||(2315342-2315429)
chr6 (206-274)||(24587488-24587556)
chr6 (156-227)||(7384481-7384552)
chr6 (156-225)||(24587454-24587523)
chr6 (242-288)||(10521862-10521908)
chr6 (239-274)||(7384515-7384550)
chr6 (258-288)||(13766751-13766781)
chr6 (152-218)||(17750892-17750957)
chr6 (239-280)||(2315325-2315366)
chr6 (242-275)||(24618627-24618660)
chr6 (239-275)||(12343176-12343212)
[»] scaffold0047 (2 HSPs)
scaffold0047 (190-288)||(63770-63868)
scaffold0047 (239-284)||(63833-63878)
[»] scaffold0161 (2 HSPs)
scaffold0161 (162-275)||(27219-27332)
scaffold0161 (162-218)||(27303-27359)
[»] scaffold0180 (1 HSPs)
scaffold0180 (154-252)||(19113-19211)
[»] scaffold1033 (2 HSPs)
scaffold1033 (201-248)||(2266-2313)
scaffold1033 (239-288)||(2289-2338)
[»] scaffold1029 (2 HSPs)
scaffold1029 (201-248)||(2266-2313)
scaffold1029 (239-288)||(2289-2338)
[»] scaffold0481 (2 HSPs)
scaffold0481 (239-288)||(2900-2949)
scaffold0481 (200-248)||(2924-2972)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 78 - 289
Target Start/End: Complemental strand, 6296828 - 6296617
Alignment:
Q  78 tattttgaacgtgtgtttgcttatcataaagtttaatannnnnnncactcagcttcactcacaaggttggtttctggatagcatttgggtgatatagagt 177  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  6296828 tattttgaacgtgtgtttgcttatcataaagtttaatatttttttcactcagcttcactcacaaggttggtttcaggatagtatttgggtgatatagagt 6296729  T
Q  178 tggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcaccca 277  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6296728 tggatgacattagtgacattagtcaattataatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcaccca 6296629  T
Q  278 actctatgtcat 289  Q
    ||||||||||||    
T  6296628 actctatgtcat 6296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 5033306 - 5033187
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  5033306 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 5033207  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||||||||||||||    
T  5033206 tgtgattggtcaatgtcacc 5033187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 5667236 - 5667123
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||||| |||||||| ||||||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  5667236 ttgggtgacatagagtttgatgacattggtgacattggccaattacaatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacattgtgat 5667137  T
Q  262 tggtcaatgtcacc 275  Q
    ||  ||||||||||    
T  5667136 tgaccaatgtcacc 5667123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 33841584 - 33841703
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||||||| ||||||||  ||||| ||| ||||||||| ||||||||||||||||||||||||||||| || |||    
T  33841584 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 33841683  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    | ||||||||||||||||||    
T  33841684 tctgattggtcaatgtcacc 33841703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 35440962 - 35441081
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| ||||||||  ||||||||| ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  35440962 tagcacttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 35441061  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||| ||||||||||    
T  35441062 tgtgattggccaatgtcacc 35441081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 4958743 - 4958627
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| ||| |||| |||||||| ||||| ||||||||||||  ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  4958743 tagcacttgcgtgacatagagttagatgatattagtgacattgaccaatcacaa-gtcacaatacttgtgaaagagagagaaacacaaacattatgacat 4958645  T
Q  256 tgtgattggtcaatgtca 273  Q
    ||||||||| ||||||||    
T  4958644 tgtgattggccaatgtca 4958627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 10086887 - 10086784
Alignment:
Q  171 atagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatg 270  Q
    |||||||||| ||||||| ||||||||  ||||| |||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||  |||||    
T  10086887 atagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatg 10086788  T
Q  271 tcac 274  Q
    ||||    
T  10086787 tcac 10086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 284
Target Start/End: Complemental strand, 39851103 - 39850972
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatga 252  Q
    |||||||| |||| ||| ||| |||||  ||||||| ||||||||  ||||| ||||| | | ||| |||||||||||||||||||||||| |||| ||     
T  39851103 ggatagcacttggatgacataaagttgagtgacattggtgacattgaccaatcacaatattataatgcttgtgaaagagagagaaacacaaacattgtgg 39851004  T
Q  253 cattgtgattggtcaatgtcacccaactctat 284  Q
    |||||||||||| |||||||||||||||||||    
T  39851003 cattgtgattggccaatgtcacccaactctat 39850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 45191126 - 45191239
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||||| |||||||||||||| ||| ||||||||    ||| |||||| |||||| ||| |||||||||||||||||||| |||| | ||||| ||||    
T  45191126 ttgggtgacatagagttggatgatattggtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaacattttgat 45191225  T
Q  262 tggtcaatgtcacc 275  Q
    ||||||||||||||    
T  45191226 tggtcaatgtcacc 45191239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 34541830 - 34541924
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctat 284  Q
    |||||||| |||||| | ||| ||||||| ||||||||||||||||||||||||||||| || |||| || | |||||||||||| |||||||||    
T  34541830 gtgacattggccaatcataatatcacaatgcttgtgaaagagagagaaacacaagcattgtggcattttgctaggtcaatgtcactcaactctat 34541924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 34229752 - 34229679
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattg 263  Q
    |||||||| | |||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  34229752 gtgacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattg 34229679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 8796533 - 8796460
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattg 263  Q
    ||||||||  ||||| | ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||    
T  8796533 gtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgattg 8796460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 8243426 - 8243488
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattg 263  Q
    |||| |||||| |||||| ||||||||||||||||||||||||||||| || |||||||||||    
T  8243426 caatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattg 8243488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 5667090 - 5667158
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgt 224  Q
    ||||| |||||||| |||||||||||||||||| |||||||| | |||| ||||||||||||| |||||    
T  5667090 tagcacttgggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgt 5667158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 34229630 - 34229703
Alignment:
Q  152 tggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    ||||||||| ||| |||| |||||||||| ||||||||||||||| || |||| ||||||||| ||| ||||||    
T  34229630 tggatagcacttgtgtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtg 34229703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 43844617 - 43844545
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    |||||||| |||||||| |||||||||||||||||| |||| |||   |||| ||||||||||||| ||||||    
T  43844617 ggatagcaattgggtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtg 43844545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 43844534 - 43844581
Alignment:
Q  228 agagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  43844534 agagagagaaacacaagcattgtgacattgtgattgatcaatatcacc 43844581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 31159962 - 31159912
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaaca 240  Q
    |||||||| |||||| | ||||||||||| |||||||||||||||||||||    
T  31159962 gtgacattcgccaatcataatgtcacaatgcttgtgaaagagagagaaaca 31159912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 8243450 - 8243401
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| || ||||||||||| |||||||||| |||||||||||||    
T  8243450 cacaagcattgtggcattgtgattgatcaatgtcactcaactctatgtca 8243401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 5033237 - 5033273
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||||||||||||||    
T  5033237 cacaagcattgtgacattgtgattggtcaatgtcacc 5033273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 35441031 - 35440995
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||||||||||||||    
T  35441031 cacaagcattgtgacattgtgattggtcaatgtcacc 35440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6296905 - 6296874
Alignment:
Q  1 cccaccttgtacttaacaaaagctccatatga 32  Q
    ||||||||||||||||||||||||||||||||    
T  6296905 cccaccttgtacttaacaaaagctccatatga 6296874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 2581895 - 2581853
Alignment:
Q  231 gagagaaacacaagcattatgacattgtgattggtcaatgtca 273  Q
    |||||||||||||||||| || |||||||||||| ||||||||    
T  2581895 gagagaaacacaagcattgtggcattgtgattggccaatgtca 2581853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 36766223 - 36766177
Alignment:
Q  242 aagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||||| ||||||| |  |||||||||||||||||||||||    
T  36766223 aagcattatgacgttgtgatcgaccaatgtcacccaactctatgtca 36766177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 34229717 - 34229766
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||| ||||||||||  |||||||||| ||||||||||||    
T  34229717 cacaagcattgtgatattgtgattgaccaatgtcacctaactctatgtca 34229766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 34541865 - 34541816
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||| ||| ||||||| ||||||||||||||| |||||||    
T  34541865 cacaagcattgtgatattatgattggccaatgtcacccaactttatgtca 34541816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 1880292 - 1880264
Alignment:
Q  247 ttatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||||||||||||||||||||||    
T  1880292 ttatgacattgtgattggtcaatgtcacc 1880264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 5667173 - 5667209
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  5667173 cacaagcattatgacattgtaattggccaatgtcacc 5667209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 8796498 - 8796534
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  8796498 cacaagcattgtgacattttgattggtcaatgtcacc 8796534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 10086756 - 10086808
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtca 214  Q
    |||||||| ||||| |||| |||||||||||||||| | |||| |||||||||    
T  10086756 ttgggtgacatagaattgggtgacattagtgacattggtcaatcacaatgtca 10086808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 10086833 - 10086869
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  10086833 cacaaacattgtgacattgtgattggtcaatgtcacc 10086869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 33841653 - 33841617
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  33841653 cacaagcattgtgacaatgtgattggtcaatgtcacc 33841617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 37618754 - 37618802
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaa 238  Q
    |||||||| |||||| ||||||||||||| ||||| | |||||||||||    
T  37618754 gtgacattggccaatcacaatgtcacaatccttgtaagagagagagaaa 37618802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 39851031 - 39851067
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||||| | ||||||||||||||||||||||    
T  39851031 cacaagcattataatattgtgattggtcaatgtcacc 39851067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 38933732 - 38933600
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||||||| ||||| || |||||| | ||||||||||| ||||||||||||||||||||||||||||| || |||    
T  38933732 tagcacttgggtgacatagagttgggtgacattggtgacgttggccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 38933633  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||||||||||||||||||||||||||    
T  38933632 tgtgattggtcaatgtcacccaactctatgtca 38933600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 6217223 - 6217349
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||||| |||||||||| ||||||| |||||||| |||||| |||||| |||||| |||||||||||||||||||||||| |||| || |||||||||    
T  6217223 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgat 6217322  T
Q  262 tggtcaatgtcacccaactctatgtca 288  Q
    ||| |||||||||||||||||||||||    
T  6217323 tggccaatgtcacccaactctatgtca 6217349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 6722096 - 6721977
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| |||||||||||| ||| |||||| |||||||||||||  |||||||||||||||||||||||||||| ||| ||    
T  6722096 tagcacttgggtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgatat 6721997  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||||||||||||||    
T  6721996 tgtgattggtcaatgtcacc 6721977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 288
Target Start/End: Complemental strand, 2828695 - 2828597
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  2828695 gtgacattggccaatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattggccaatgtcacccaactctatgtca 2828597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 165 - 288
Target Start/End: Original strand, 14229355 - 14229477
Alignment:
Q  165 ggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattgg 264  Q
    ||||| |||||||| | ||||||| |||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |    
T  14229355 ggtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatt-g 14229453  T
Q  265 tcaatgtcacccaactctatgtca 288  Q
     |||||||| ||||||||||||||    
T  14229454 ccaatgtcatccaactctatgtca 14229477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 16514569 - 16514450
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||| ||| ||||||||  ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  16514569 tagcacttgggtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcat 16514470  T
Q  256 tgtgattggtcaatgtcacc 275  Q
     |||||||| ||||||||||    
T  16514469 agtgattggccaatgtcacc 16514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 37961845 - 37961722
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||||| |||||||||  ||| ||| ||||||||  ||||| |||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  37961845 ttgggtgacatagagttgagtgatatttgtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatggcattgtgat 37961746  T
Q  262 tggtcaatgtcacccaactctatg 285  Q
     |||||||||||||||||||||||    
T  37961745 cggtcaatgtcacccaactctatg 37961722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 191 - 288
Target Start/End: Complemental strand, 2894073 - 2893976
Alignment:
Q  191 tgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||| | |||| ||| ||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  2894073 tgacattggtcaatcacagtgtcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgattggccaatgtcacccaactctatgtca 2893976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 173 - 286
Target Start/End: Original strand, 29925580 - 29925693
Alignment:
Q  173 agagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtc 272  Q
    |||||||| ||| ||| |||||||| |||  | ||||||||| ||| |||||||||||||||||||||||| |||| || |||||||||||| |||||||    
T  29925580 agagttgggtgatattggtgacattggcccctcacaatgtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtc 29925679  T
Q  273 acccaactctatgt 286  Q
    ||||||||||||||    
T  29925680 acccaactctatgt 29925693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 264
Target Start/End: Original strand, 14470582 - 14470693
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatga 252  Q
    |||||||| ||| |||| |||||||||| ||||||| ||||||||  ||||| |||||||  |||| |||||||||||||||||||||||| |||| |||    
T  14470582 ggatagcacttgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatgttgcaatgcttgtgaaagagagagaaacacaaacattgtga 14470681  T
Q  253 cattgtgattgg 264  Q
    ||||||||||||    
T  14470682 cattgtgattgg 14470693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 14892405 - 14892298
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||   |||| ||||||| ||||||||| ||||||||||||||| |||| || | ||||||    
T  14892405 tagcatttgggtgacatagagttggatgacattggtgacattgatcaatcacaatgttacaatacttatgaaagagagagaaagacaaaca-tgtgacat 14892307  T
Q  256 tgtgattgg 264  Q
    |||||||||    
T  14892306 tgtgattgg 14892298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 275
Target Start/End: Original strand, 29508692 - 29508803
Alignment:
Q  165 ggtgatatagagttggatgacattagtgacattagccaattacaa-tgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattg 263  Q
    ||||| |||||||||| ||||||| ||||||||  ||||| |||| || |||||| |||||||||||||||||||||||||||||  | |||||||||||    
T  29508692 ggtgacatagagttgggtgacattggtgacattgaccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattg 29508791  T
Q  264 gtcaatgtcacc 275  Q
    | ||||||||||    
T  29508792 gccaatgtcacc 29508803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 275
Target Start/End: Complemental strand, 15011392 - 15011306
Alignment:
Q  189 agtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| |||| || |||||||||||| |||| |||||    
T  15011392 agtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatatcacc 15011306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 273
Target Start/End: Complemental strand, 8534288 - 8534174
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatga 252  Q
    |||||||| |||||||||||||||||||||||      ||| ||| | |||||||||||||||||| ||||||||| ||||||||||||||  ||| | |    
T  8534288 ggatagcacttgggtgatatagagttggatga------tgatattggtcaattacaatgtcacaattcttgtgaaatagagagaaacacaaatattttta 8534195  T
Q  253 cattgtgattggtcaatgtca 273  Q
    |||||| |||| |||||||||    
T  8534194 cattgtaattgatcaatgtca 8534174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 24116055 - 24115950
Alignment:
Q  166 gtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggt 265  Q
    |||| |||||||||| || ||||||||| ||| | |||| |||||||| |||| |||||||||||| | |||||||| ||||| | |||||||||||||     
T  24116055 gtgacatagagttgggtgccattagtgatattggtcaatcacaatgtcgcaatgcttgtgaaagagtgtgaaacacaggcattgtaacattgtgattggc 24115956  T
Q  266 caatgt 271  Q
    ||||||    
T  24115955 caatgt 24115950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 2143943 - 2143997
Alignment:
Q  234 agaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  2143943 agaaacacaagcattatgacattgtgattggccaacgtcactcaactctatgtca 2143997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 37762027 - 37762101
Alignment:
Q  189 agtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattg 263  Q
    |||||||||  ||||| |||||||| |||| ||||||||||||| ||||||||||||||| ||| ||||||||||    
T  37762027 agtgacattgaccaatcacaatgtcgcaatgcttgtgaaagagaaagaaacacaagcattgtgatattgtgattg 37762101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 15011356 - 15011405
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  15011356 cacaagcattgtgacattgtgattggccaatgtcactcaactctatgtca 15011405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 32545936 - 32545855
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagaga 234  Q
    |||||||| |||||||| ||||||||   ||||||| |||||||| |||||| | ||||||||||| ||| |||||||||||    
T  32545936 ggatagcacttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaatgcttatgaaagagaga 32545855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 274
Target Start/End: Original strand, 1945401 - 1945517
Alignment:
Q  152 tggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatg 251  Q
    ||||||||| |||| ||||||| |||||| ||||||| |||| ||| | |||||||||||      | ||||||||||||||| ||||  ||||||| |     
T  1945401 tggatagcacttggatgatataaagttgggtgacattggtgatattggtcaattacaatg------tgcttgtgaaagagagaaaaacttaagcattgta 1945494  T
Q  252 acattgtgattggtcaatgtcac 274  Q
    | |||||||||||| ||||||||    
T  1945495 atattgtgattggttaatgtcac 1945517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 37762063 - 37762014
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||||  |||||||||||||||||||||||| |||||||| ||||    
T  37762063 cacaagcattgcgacattgtgattggtcaatgtcactcaactctacgtca 37762014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 2828663 - 2828703
Alignment:
Q  242 aagcattatgacattgtgattggtcaatgtcacccaactct 282  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  2828663 aagcattgtgacattgtgattggccaatgtcacccaactct 2828703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 16514500 - 16514536
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||||||||||||||    
T  16514500 cacaagcattgtgacattgtgattggtcaatgtcacc 16514536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 565372 - 565335
Alignment:
Q  238 acacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  565372 acacaaggattatgacattgtgattggccaatgtcacc 565335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 2894039 - 2894088
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||| ||||||||  |||||||| ||||||||||||||    
T  2894039 cacaagcattgtgacactgtgattgaccaatgtcatccaactctatgtca 2894088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 14464617 - 14464568
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||| ||| ||||||||||||||  ||||||||| |||||||||||||    
T  14464617 cacaagtattgtgacattgtgattgaccaatgtcactcaactctatgtca 14464568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 14464581 - 14464622
Alignment:
Q  189 agtgacattagccaattacaatgtcacaatacttgtgaaaga 230  Q
    ||||||||| | |||| |||||||||||||||||||||||||    
T  14464581 agtgacattggtcaatcacaatgtcacaatacttgtgaaaga 14464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 42628440 - 42628308
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||||||| |||| ||| |||||| |||||||| |||| ||||||||||||||||||||| ||||||| || |||    
T  42628440 tagcacttgggtgacatagagttgggtgacattggtgatattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcat 42628341  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||||||||||||||||||||||||||    
T  42628340 tgtgattggtcaatgtcacccaactctatgtca 42628308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 11017014 - 11016895
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||||||| ||||||||  ||||| |||||||||||||  |||||||||||||||||||||||||||| || |||    
T  11017014 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcat 11016915  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||| ||||||||||    
T  11016914 tgtgattggccaatgtcacc 11016895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 4290690 - 4290583
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| ||| |||||| ||||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||| |||||| || |||    
T  4290690 tagcacttgggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaattcttgtgaaagagagagaaacacgagcattgtggcat 4290591  T
Q  256 tgtgattg 263  Q
    ||||||||    
T  4290590 tgtgattg 4290583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 29053341 - 29053439
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||| |||||| |||||| | |||| |||||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||    
T  29053341 gtgacattggccaatcacaatgcctcaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtca 29053439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 190 - 277
Target Start/End: Original strand, 7671938 - 7672025
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcaccca 277  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||| || |||||||||||| ||||||||||||    
T  7671938 gtgacattagccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcaccca 7672025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 15027661 - 15027568
Alignment:
Q  182 tgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||| ||||||||  ||||| ||||||||||||| |||||||||||||||||||||||| |||| ||  ||||||||||||||||||||||    
T  15027661 tgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcacc 15027568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 41018255 - 41018340
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||| |||||| |||||||| |||| ||||||||||||||||||||| ||||||| || |||||||||||||||||||||||    
T  41018255 gtgacattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcacc 41018340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 38975941 - 38975843
Alignment:
Q  165 ggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattg 263  Q
    ||||| |||||||| | ||||||| ||||||||   |||||| |||| |||||| ||||||||||||||||||||||||||||| || |||||||||||    
T  38975941 ggtgacatagagttaggtgacattggtgacattgatcaattataatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattg 38975843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 288
Target Start/End: Complemental strand, 4649433 - 4649333
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagaga--aacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtc 287  Q
    |||||||| | |||| |||||||||| || |||||||||||||||||  |||||||||||| |  |||||||||||  ||||||||||||||||||||||    
T  4649433 gtgacattggtcaatcacaatgtcacgatgcttgtgaaagagagagagaaacacaagcattgtagcattgtgattgaccaatgtcacccaactctatgtc 4649334  T
Q  288 a 288  Q
    |    
T  4649333 a 4649333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 48000876 - 48000769
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||| | |||||||||| ||||||| ||||||||  ||||| |||||| ||||||   |||||||||||||||||||||| |||| || |||||||||    
T  48000876 ttgggtcacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgtctgtgaaagagagagaaacacaaacattgtggcattgtgat 48000777  T
Q  262 tggtcaat 269  Q
    ||| ||||    
T  48000776 tggccaat 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 27028831 - 27028905
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||| ||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||||||  ||||||||||    
T  27028831 caatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattgaccaatgtcacc 27028905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 34854722 - 34854807
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||| |||||| |||||| |||||| ||||||||||||| |||||||||| |||| || |||||||||||  ||||||||||    
T  34854722 gtgacattggccaatcacaatgccacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtcacc 34854807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 10419553 - 10419485
Alignment:
Q  206 acaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcac 274  Q
    |||||||||||| |||||||||||||||||||||||||| ||| | ||||| ||||||  |||||||||    
T  10419553 acaatgtcacaaaacttgtgaaagagagagaaacacaagtattgtaacattatgattgaccaatgtcac 10419485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 22764757 - 22764812
Alignment:
Q  220 cttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||| |||||    
T  22764757 cttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcacc 22764812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 41018290 - 41018240
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtcat 289  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  41018290 cacaagcattgggacattgtgattggccaatgtcacccaactctatgtcat 41018240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 45231908 - 45231962
Alignment:
Q  221 ttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||    
T  45231908 ttgtgaaagagagagaaacaaaagcattgtaacattgtgattggccaatgtcacc 45231962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 48000693 - 48000769
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaa 238  Q
    |||||||| || ||||||| ||||||| ||||||||   |||| |||||| |||||| |||||||||||||||||||    
T  48000693 ttgggtgacattgagttgggtgacattggtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaa 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 45231902 - 45231867
Alignment:
Q  253 cattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||||||||||||||||||||||||||||||    
T  45231902 cattgtgattggtcaatgtcacccaactctatgtca 45231867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 41946003 - 41945893
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatga 252  Q
    ||||| || |||||||| ||| |||||  ||||||| || | ||| | |||| ||||||| ||||| ||||||||||||| | |||| ||| ||||||||    
T  41946003 ggataacacttgggtgacataaagttgagtgacattggtaatattggtcaatcacaatgttacaatgcttgtgaaagagaaaaaaacgcaaacattatga 41945904  T
Q  253 cattgtgattg 263  Q
    |||| ||||||    
T  41945903 cattatgattg 41945893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 34854757 - 34854708
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| || |||||||||||| |||||||||| ||||||||||||    
T  34854757 cacaagcattgtggcattgtgattggccaatgtcaccaaactctatgtca 34854708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 15027618 - 15027654
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||||||||||||||    
T  15027618 cacaagcattgtgacattgtgattggtcaatgtcacc 15027654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 30217504 - 30217564
Alignment:
Q  213 cacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtca 273  Q
    |||||| ||||||||||||||||||||| || |||| ||| |||||||||||  |||||||    
T  30217504 cacaatgcttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtca 30217564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 30165329 - 30165368
Alignment:
Q  245 cattatgacattgtgattggtcaatgtcacccaactctat 284  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  30165329 cattatgacattgtgattgaccaatgtcacccaactctat 30165368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 27028852 - 27028806
Alignment:
Q  242 aagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||| ||||||||||||||  |||||| ||||||||||||||||    
T  27028852 aagcattgtgacattgtgattgtccaatgttacccaactctatgtca 27028806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 4649398 - 4649447
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||  ||||||||||||||  |||||||||| ||||||||||||    
T  4649398 cacaagcatcgtgacattgtgattgaccaatgtcaccaaactctatgtca 4649447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 27028795 - 27028754
Alignment:
Q  234 agaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||||||||||| ||||||||||||||  ||||||||||    
T  27028795 agaaacacaagcattgtgacattgtgattgtccaatgtcacc 27028754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 29053376 - 29053327
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||||  | |||||||||||| |||||||||| ||||||||||||    
T  29053376 cacaagcattgaggcattgtgattggccaatgtcaccaaactctatgtca 29053327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 11016945 - 11016981
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  11016945 cacaaacattgtgacattgtgattggtcaatgtcacc 11016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 3899984 - 3899852
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| ||||||||  ||||||||| ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  3899984 tagcacttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 3899885  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||| |||||||||||||||||||||||    
T  3899884 tgtgattggccaatgtcacccaactctatgtca 3899852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 16971289 - 16971157
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  16971289 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 16971190  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||| ||||||||||||| |||||||||    
T  16971189 tgtgattggccaatgtcacccaagtctatgtca 16971157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 29699512 - 29699393
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||| ||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  29699512 tagcacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 29699413  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||| ||||||||||    
T  29699412 tgtgattggccaatgtcacc 29699393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 172 - 288
Target Start/End: Complemental strand, 26662529 - 26662412
Alignment:
Q  172 tagagttggatgacattagtgacattagccaatt-acaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatg 270  Q
    ||||||||| ||| ||| |||||||| | ||| | ||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||    
T  26662529 tagagttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatg 26662430  T
Q  271 tcacccaactctatgtca 288  Q
    ||||||||||||||||||    
T  26662429 tcacccaactctatgtca 26662412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 172 - 288
Target Start/End: Complemental strand, 26934124 - 26934007
Alignment:
Q  172 tagagttggatgacattagtgacattagccaatt-acaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatg 270  Q
    ||||||||| ||| ||| |||||||| | ||| | ||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||    
T  26934124 tagagttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatg 26934025  T
Q  271 tcacccaactctatgtca 288  Q
    ||||||||||||||||||    
T  26934024 tcacccaactctatgtca 26934007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 2093930 - 2094062
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||| ||| ||||||||   |||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |     
T  2093930 tagcacttgggtgacatagagttgggtgatattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattatgatag 2094029  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||| |||||| |||||||| |||||||||    
T  2094030 tgtgattagtcaatatcacccaattctatgtca 2094062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 160 - 288
Target Start/End: Complemental strand, 28819058 - 28818930
Alignment:
Q  160 atttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtg 259  Q
    |||||||||| |||||||||  ||| ||| |||||||| | |||| | ||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||    
T  28819058 atttgggtgacatagagttgagtgatattggtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtg 28818959  T
Q  260 attggtcaatgtcacccaactctatgtca 288  Q
    ||||  |||||||||||||||||||||||    
T  28818958 attgaccaatgtcacccaactctatgtca 28818930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 2953335 - 2953211
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||        |||    
T  2953335 tagcacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaag--------cat 2953244  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||  |||||||||||||||||||||||    
T  2953243 tgtgattgaccaatgtcacccaactctatgtca 2953211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 19655297 - 19655184
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||||| |||||||||  ||||||| ||||||||  ||||| ||||||||||||| |||||||||||||||||||||||| |||| || |||||||||    
T  19655297 ttgggtgacatagagttgagtgacattggtgacattgtccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgat 19655198  T
Q  262 tggtcaatgtcacc 275  Q
    ||| ||||||||||    
T  19655197 tggccaatgtcacc 19655184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 291242 - 291123
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||   |||| |||||||||||||  |||||||||||| ||||| ||||||||| || |||    
T  291242 tagcacttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgtggcat 291143  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||| ||||||||||    
T  291142 tgtgattggccaatgtcacc 291123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 12913944 - 12913829
Alignment:
Q  160 atttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtg 259  Q
    ||||| |||| |||||||||| ||||||| |||| ||| | |||| ||||||||| ||| ||||||||||||||||| ||||||| ||| ||||||||||    
T  12913944 atttgtgtgacatagagttgggtgacattggtgatattggtcaatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtg 12913845  T
Q  260 attggtcaatgtcacc 275  Q
    ||||| ||||||||||    
T  12913844 attggccaatgtcacc 12913829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 38134409 - 38134497
Alignment:
Q  199 gccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtc 287  Q
    |||||| ||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||    
T  38134409 gccaatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcattgtgacattgtgattggccaatatcatccaactctatgtc 38134497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 263
Target Start/End: Original strand, 30117821 - 30117928
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||||||||||||||||||||||| ||||||| |||| |||  ||||| |||||||||||||  || ||||| ||||||||||||||||||| || |||    
T  30117821 tagcatttgggtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatgtttatgaaaaagagagaaacacaagcattgtggcat 30117920  T
Q  256 tgtgattg 263  Q
    | ||||||    
T  30117921 tatgattg 30117928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 16439238 - 16439164
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  16439238 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcacc 16439164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 2356416 - 2356288
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| ||| |||| |||||||||||||||||| |||||||| |||||| || |||||||||| ||| ||||  ||||||||||||||||||||| ||||    
T  2356416 tagcacttgtgtgacatagagttggatgacattggtgacattggccaatcac-atgtcacaatgcttatgaa--agagagaaacacaagcattataacat 2356320  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||| ||||   ||||||| ||||||||||||||    
T  2356319 tgtaattgcctaatgtca-ccaactctatgtca 2356288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 16802556 - 16802467
Alignment:
Q  189 agtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaa 278  Q
    |||||||||  ||||| | ||||||||||| ||||| ||||||||||||||||||  ||| | ||||||||||||| |||||||||||||    
T  16802556 agtgacattgaccaatcagaatgtcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgattggccaatgtcacccaa 16802467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 3180105 - 3180172
Alignment:
Q  208 aatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||||  |||||||||||||||||||||||||||| || |||||||||||  ||||||||||    
T  3180105 aatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcacc 3180172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 16439214 - 16439263
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16439214 cacaagcattgtgacattgtgattgatcaatgtcacccaactctatgtca 16439263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 19598442 - 19598358
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||||| ||||| | ||||||| ||| ||||||||||||||||||||||||||||| ||  ||||||||||  ||||||||||    
T  19598442 gtgacattaaccaatcataatgtca-aatgcttgtgaaagagagagaaacacaagcattgtggtattgtgattgaccaatgtcacc 19598358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 1638446 - 1638512
Alignment:
Q  152 tggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaat 218  Q
    ||||||||| || |||||||||||||||| ||| ||| |||| ||| |||||| |||||||||||||    
T  1638446 tggatagcacttaggtgatatagagttgggtgatatttgtgatattggccaatcacaatgtcacaat 1638512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 3180122 - 3180073
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||| |||| ||||||| |||||| ||||||||||||||||||||||||    
T  3180122 cacaaacattgtgacattatgattgatcaatgtcacccaactctatgtca 3180073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 16439127 - 16439200
Alignment:
Q  152 tggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    ||||||||| |||| |||||||||||||| | | ||| |||||||| | |||| ||||||||||||| ||||||    
T  16439127 tggatagcacttggatgatatagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtg 16439200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 19598408 - 19598456
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  19598408 cacaagcatt-tgacattatgattggttaatgtcacccaactctatgtca 19598456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 2093999 - 2093963
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||||||||||||||||||||| |||||||||||    
T  2093999 cacaagcattatgacattgtgattgatcaatgtcacc 2093963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 3899915 - 3899951
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||||||||||||||    
T  3899915 cacaagcattgtgacattgtgattggtcaatgtcacc 3899951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 16802521 - 16802565
Alignment:
Q  240 acaagcattatgacattgtgattggtcaatgtcacccaactctat 284  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||    
T  16802521 acaagcattgtgacattctgattggtcaatgtcactcaactctat 16802565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 16971220 - 16971256
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||||||||||||||    
T  16971220 cacaagcattgtgacattgtgattggtcaatgtcacc 16971256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 39031200 - 39031263
Alignment:
Q  212 tcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||| ||||||||||| ||||||| ||||  ||||||| |||||||||| ||| |||||||    
T  39031200 tcacaatgcttgtgaaagaaagagaaatacaaatattatgatattgtgattgatcagtgtcacc 39031263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 14167146 - 14167223
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagaga 234  Q
    ||||| |||||||||||||| ||| |||| ||| ||||| ||  | ||| ||||||||||||| |||||||||||||||    
T  14167146 tagcacttgggtgatatagaattg-atgatattggtgactttgacgaatcacaatgtcacaatccttgtgaaagagaga 14167223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 2935826 - 2935941
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatga 252  Q
    ||||||||||| |||||||||||||||  ||||||||     ||| |  ||| ||||||||| |||  |||| ||||| |||||||||||| |||| |||    
T  2935826 ggatagcatttaggtgatatagagttgtgtgacatta-----att-gttaatcacaatgtcataatgtttgtaaaagatagagaaacacaaacattgtga 2935919  T
Q  253 cattgtgattggtcaatgtcac 274  Q
    ||||||| ||| ||||| ||||    
T  2935920 cattgtggttgttcaatatcac 2935941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 6912355 - 6912388
Alignment:
Q  255 ttgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||||||||||||||| ||||||||||||    
T  6912355 ttgtgattggtcaatgtcaccaaactctatgtca 6912388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 12913796 - 12913865
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    ||||| ||| |||| ||| |||||  ||||||| |||||||| |||||| ||||||||||||| ||||||    
T  12913796 tagcacttgtgtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaattcttgtg 12913865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 2953266 - 2953302
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  2953266 cacaagcattgtgacattgtgattggccaatgtcacc 2953302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 19655234 - 19655270
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  19655234 cacaagcattgtgacattgtgattggacaatgtcacc 19655270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 29699443 - 29699479
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  29699443 cacaagcattgtgacattgtgattggccaatgtcacc 29699479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 42375155 - 42375023
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||||||| ||||||||   |||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  42375155 tagcacttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 42375056  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||  |||||||||||||||||||||||    
T  42375055 tgtgattgaccaatgtcacccaactctatgtca 42375023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 47661987 - 47661868
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    |||||||||||||| |||||||||| ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  47661987 tagcatttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 47661888  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||| ||||||||||    
T  47661887 tgtgattggccaatgtcacc 47661868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 23444262 - 23444381
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    |||||||||||| | |||||||||| ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  23444262 tagcatttgggtaacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 23444361  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||| ||||||||||    
T  23444362 tgtgattggccaatgtcacc 23444381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 166 - 280
Target Start/End: Complemental strand, 53954745 - 53954631
Alignment:
Q  166 gtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggt 265  Q
    |||| |||||||||| ||||||| ||||||||  ||||||||||||||||||| |||||||||||| ||||||||| |||||| |||||||||||||||     
T  53954745 gtgacatagagttgggtgacattggtgacattgtccaattacaatgtcacaatgcttgtgaaagagtgagaaacactagcattgtgacattgtgattggc 53954646  T
Q  266 caatgtcacccaact 280  Q
    |||||||||||||||    
T  53954645 caatgtcacccaact 53954631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 6271847 - 6271728
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||  ||| ||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  6271847 tagcacttgggtgacatagagttgagtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 6271748  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||| ||||||||||    
T  6271747 tgtgattggccaatgtcacc 6271728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 190 - 292
Target Start/End: Complemental strand, 40789290 - 40789188
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtcat 289  Q
    |||| ||| |||||| ||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||    
T  40789290 gtgatattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcaccaaactctatgtcat 40789191  T
Q  290 tca 292  Q
    |||    
T  40789190 tca 40789188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 51265590 - 51265471
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| ||||||||  ||||||||| ||||||| ||||||||  ||||| | ||||||||||| ||||||||||||||||||||||||||||| || |||    
T  51265590 tagcacttgggtgacttagagttgggtgacattggtgacattgaccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 51265491  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||| ||||||||||    
T  51265490 tgtgattggccaatgtcacc 51265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 190 - 288
Target Start/End: Complemental strand, 52028660 - 52028562
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||| |||||| ||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||||| |||| ||||||||||||||||||    
T  52028660 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaatatcacccaactctatgtca 52028562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 55090022 - 55090121
Alignment:
Q  189 agtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||| | |||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||| |||||||||||||    
T  55090022 agtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgattgaccaatgtcactcaactctatgtca 55090121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 47404612 - 47404710
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||| | |||| ||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||  |||||||||||||||||||||||    
T  47404612 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcattgtggcattgtgattgaccaatgtcacccaactctatgtca 47404710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 35682301 - 35682192
Alignment:
Q  166 gtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggt 265  Q
    |||| |||||||| | ||||||| ||||||||  || || ||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||     
T  35682301 gtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggc 35682202  T
Q  266 caatgtcacc 275  Q
    ||||||||||    
T  35682201 caatgtcacc 35682192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 47762734 - 47762635
Alignment:
Q  175 agttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcac 274  Q
    |||||||||| ||| |||||||| | |||  | ||||||||||| ||||||||||||||||||||| || |||| | |||||||||||||||||||||||    
T  47762734 agttggatgatattggtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtcac 47762635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 24006097 - 24006187
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||| |||||| |||||| |||||| ||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||||||||    
T  24006097 gtgacattggccaatcacaatgacacaatgcttgtgaaagagagagaaacataa--------acattgtgattggtcaatgtcacccaactctatgtca 24006187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 30861823 - 30861886
Alignment:
Q  212 tcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  30861823 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 30861886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 272
Target Start/End: Complemental strand, 44380078 - 44379959
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatga 252  Q
    ||||| ||||||||||| |||||||||  ||||||| |||| |||  ||||| ||||||| ||||||||| | ||| |||||||||| |||||||| |||    
T  44380078 ggataacatttgggtgacatagagttgagtgacattggtgatattgaccaatcacaatgttacaatacttataaaatagagagaaacgcaagcattgtga 44379979  T
Q  253 cattgtgattggtcaatgtc 272  Q
    |||| | ||||| |||||||    
T  44379978 cattataattggccaatgtc 44379959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 38714942 - 38714836
Alignment:
Q  182 tgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactc 281  Q
    ||||||| |||| |||| |||||  ||||||||||||  |||||||||| | ||||||| ||  ||||||||||||||||||| |||| ||||| |||||    
T  38714942 tgacattggtgatattacccaatctcaatgtcacaatgtttgtgaaagaaatagaaacataaatattatgacattgtgattggccaatatcacctaactc 38714843  T
Q  282 tatgtca 288  Q
    |||||||    
T  38714842 tatgtca 38714836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 50384132 - 50384190
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcatt 248  Q
    |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  50384132 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 50384190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 26186043 - 26186124
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtca 273  Q
    |||||||| | |||| ||||||||||||| ||||||||||||  ||||||||||||||| ||| ||||||||||| ||||||||    
T  26186043 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgaaattgtgattggccaatgtca 26186124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 31430488 - 31430583
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||  ||||| ||||||||||||| ||| |||||||||||||||||||| |    || |||||| ||||| |||||||||||||||||||||||    
T  31430488 gtgacattgaccaatcacaatgtcacaatgcttatgaaagagagagaaacacaaac---gtggcattgtaattggccaatgtcacccaactctatgtca 31430583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 31430520 - 31430474
Alignment:
Q  242 aagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  31430520 aagcattgtgacattgtgattggtcaatgtcacccaactctatgtca 31430474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 31532727 - 31532801
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||| ||||||||||||||  ||| ||||||||||||| |||| |||| |||| |||||||||||||||||||||    
T  31532727 caatcacaatgtcacaatatatgtaaaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtcacc 31532801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 50384167 - 50384118
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  50384167 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtca 50384118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 43063506 - 43063572
Alignment:
Q  151 ctggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaa 217  Q
    |||| |||||||||||||||||| | || ||||||||| ||||||||||||||  ||||||||||||    
T  43063506 ctgggtagcatttgggtgatataaaatttgatgacattggtgacattagccaaccacaatgtcacaa 43063572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 47404647 - 47404598
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  47404647 cacaagcattgtgacattgtgattgaccaatgtcacccaactctatgtca 47404598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 52028625 - 52028673
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtc 287  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  52028625 cacaagcattgtgacattgtgattggccaatgtcacccaattctatgtc 52028673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 25818387 - 25818458
Alignment:
Q  177 ttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcatt 248  Q
    |||| |||||||  ||||||| | |||| |||||||||||||  ||||||||||||||||||||||| ||||    
T  25818387 ttgggtgacattgatgacattggtcaatcacaatgtcacaatgattgtgaaagagagagaaacacaatcatt 25818458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 30861913 - 30861850
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    |||||||| |||||||||||||| ||| |||||||| |||||| |||||| |||||| ||||||    
T  30861913 ttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtg 30861850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 24006132 - 24006083
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| || |||||||||||| ||||||||||||||| |||||||    
T  24006132 cacaagcattgtgtcattgtgattggccaatgtcacccaactgtatgtca 24006083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 28693951 - 28694012
Alignment:
Q  191 tgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatga 252  Q
    |||||||  ||||| ||||| |||||||  ||||||||||||||||||||||| ||||||||    
T  28693951 tgacattgaccaatcacaatatcacaatgtttgtgaaagagagagaaacacaaacattatga 28694012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 40789255 - 40789304
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||||||||||| |||| ||||| ||||||||||||    
T  40789255 cacaagcattgtgacattgtgattggccaatatcaccaaactctatgtca 40789304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 55090058 - 55090009
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||||||||||  ||||||||| |||||||||||||    
T  55090058 cacaagcattgtgacattgtgattgaccaatgtcactcaactctatgtca 55090009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 23444331 - 23444295
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||||||||||||||    
T  23444331 cacaagcattgtgacattgtgattggtcaatgtcacc 23444295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 45591455 - 45591495
Alignment:
Q  208 aatgtcacaatacttgtgaaagagagagaaacacaagcatt 248  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  45591455 aatgtcacaatgcttgtgaaagagagagaaacacaaacatt 45591495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 47661918 - 47661954
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||||||||||||||    
T  47661918 cacaagcattgtgacattgtgattggtcaatgtcacc 47661954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 54716402 - 54716362
Alignment:
Q  248 tatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  54716402 tatgagattgtgattgatcaatgtcacccaactctatgtca 54716362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 17285807 - 17285845
Alignment:
Q  240 acaagcattatgacattgtgattggtcaatgtcacccaa 278  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  17285807 acaagtattgtgacattgtgattggtcaatgtcacccaa 17285845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 28693985 - 28693936
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||| |||| ||| |||||||||||||||||||| |||||| |||||||    
T  28693985 cacaaacattgtgatattgtgattggtcaatgtcatccaactttatgtca 28693936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 55089935 - 55089890
Alignment:
Q  243 agcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||| ||||||||||||||  ||||||||| |||||||||||||    
T  55089935 agcattgtgacattgtgattgaccaatgtcactcaactctatgtca 55089890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 6271778 - 6271814
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  6271778 cacaagcattgtgacattgtgattggccaatgtcacc 6271814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 35682242 - 35682278
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| |||||||||||| |||||||||||||    
T  35682242 cacaagcattgtgacattgtgatcggtcaatgtcacc 35682278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 42375086 - 42375122
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| |||||||||||||| |||||||||||    
T  42375086 cacaagcattgtgacattgtgattgatcaatgtcacc 42375122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 51265521 - 51265557
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  51265521 cacaagcattgtgacattatgattggtcaatgtcacc 51265557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 57)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 48993910 - 48994029
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  48993910 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 48994009  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||||||||||||||    
T  48994010 tgtgattggtcaatgtcacc 48994029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 15220956 - 15220824
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    |||||||||||||| |||||||||| ||||||| |||| ||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||| ||    
T  15220956 tagcatttgggtgacatagagttgggtgacattggtgatattggccaatcacaatctcacaatgcttgtgaaagagagagaaacacaagcattgtgagat 15220857  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
     |||||||  |||||||||||||||| ||||||    
T  15220856 cgtgattgaccaatgtcacccaactccatgtca 15220824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 17127567 - 17127675
Alignment:
Q  166 gtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggt 265  Q
    ||||||||||||| | ||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  17127567 gtgatatagagttaggtgacattagtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggt 17127666  T
Q  266 caatgtcac 274  Q
    |||||||||    
T  17127667 caatgtcac 17127675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 191 - 288
Target Start/End: Original strand, 46333974 - 46334071
Alignment:
Q  191 tgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  46333974 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattggtcaatgtcatccaactctatgtca 46334071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 32540756 - 32540860
Alignment:
Q  171 atagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatg 270  Q
    |||||||||| ||||||| ||| |||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  32540756 atagagttgggtgacattggtggcattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatg 32540855  T
Q  271 tcacc 275  Q
    |||||    
T  32540856 tcacc 32540860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 29371516 - 29371381
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatga 252  Q
    |||||||| ||| |||| |||||| | | ||||||| |||| |||  ||||| ||||||||||||| |||||||||||||||||||||||| |||| |||    
T  29371516 ggatagcacttgtgtgacatagagctaggtgacattggtgatattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtga 29371417  T
Q  253 cattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||||| |||||||||| ||||||||||||    
T  29371416 cattgtgattggccaatgtcacctaactctatgtca 29371381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 5995508 - 5995399
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||||| |||||||||||||||||| ||||||||  ||||| |||||| |||||| ||||||||||||||||||||||||||||| || |||||||||    
T  5995508 ttgggtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgat 5995409  T
Q  262 tggtcaatgt 271  Q
    ||| ||||||    
T  5995408 tggccaatgt 5995399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 37155157 - 37155072
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  37155157 gtgacattggccaatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 37155072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 29179590 - 29179709
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||| ||| |||||||||| ||||||| |||||| |  ||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  29179590 tagcacttggatgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcat 29179689  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||| ||||||||||    
T  29179690 tgtgattggccaatgtcacc 29179709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 8337878 - 8337976
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||| | |||| |||||||||||||  ||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||    
T  8337878 gtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattggtcaatgtcacccaactctatgtca 8337976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 49444906 - 49445036
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| ||||||| |||||||    |||| ||||||| ||||| |||||||  |||||||||||||||||||| || |||    
T  49444906 tagcacttgggtgacatagagttgggtgacattggtgacatcgatcaatcacaatgttacaatgcttgtga--gagagagaaacacaagcattgtggcat 49445003  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||| |||||||||||||||||||||||    
T  49445004 tgtgattggccaatgtcacccaactctatgtca 49445036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 33219712 - 33219586
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||| | |||||||||||||||||| ||||||||   |||| ||||||||| ||| ||||||||||||||| ||||||||||||| | ||||||||||    
T  33219712 ttgggtaacatagagttggatgacattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgat 33219613  T
Q  262 tggtcaatgtcacccaactctatgtca 288  Q
    || ||||||||| |||| |||| ||||    
T  33219612 tgatcaatgtcatccaattctacgtca 33219586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 190 - 288
Target Start/End: Complemental strand, 34062320 - 34062222
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||  ||||| |||||||||||||  |||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||||||||    
T  34062320 gtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacataagcattgtggcattgtgattggccaatgtcacccaactctatgtca 34062222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 47303506 - 47303412
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctat 284  Q
    |||||||| | |||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  47303506 gtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaatatcacctaactctat 47303412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 4609107 - 4609022
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||| | |||| ||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||    
T  4609107 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatgggtcaatgtcacc 4609022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 190 - 278
Target Start/End: Original strand, 741529 - 741617
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaa 278  Q
    ||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||    
T  741529 gtgacattgcccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatcgaccaatgtcacccaa 741617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 38674532 - 38674628
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||| ||| |||||| ||||||||||||| ||||||||||||  ||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||    
T  38674532 gtgatattggccaatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgacattatgattggccaatatcacccaactctatgtca 38674628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 1091582 - 1091656
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||| ||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  1091582 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcacc 1091656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 45728396 - 45728313
Alignment:
Q  192 gacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||| | |||| ||||||||| ||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||    
T  45728396 gacattggtcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcacc 45728313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 9157410 - 9157340
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgt 271  Q
    |||| ||||| ||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  9157410 caatcacaatatcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgattggtcaatgt 9157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 48604974 - 48605064
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaact 280  Q
    |||||||| | |||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||| | ||||| ||||||||| |||||    
T  48604974 gtgacattggtcaatcacaatgtcacaatatttgtgaaagagagagaaacgcaagcattgtgacattataattggccaatgtcactcaact 48605064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 21630118 - 21630068
Alignment:
Q  225 gaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcacc 21630068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 44706810 - 44706896
Alignment:
Q  190 gtgacattagccaattacaa-tgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||| |||||| |||| || |||||| |||||||||||||||||||||||||||||  | |||||||||||| ||||||||||    
T  44706810 gtgacattggccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcacc 44706896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 1819551 - 1819498
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtcattca 292  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  1819551 cacaagcattgtgacattgtgattgatcaatgtcacccaactctatgtcattca 1819498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 36290456 - 36290519
Alignment:
Q  212 tcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||||| ||||    
T  36290456 tcacaatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccacc 36290519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 28395708 - 28395663
Alignment:
Q  230 agagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcacc 28395663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 34062285 - 34062332
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgt 286  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  34062285 cacaaacattgtgacattgtgattggtcaatgtcacccaactctatgt 34062332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 48823945 - 48823898
Alignment:
Q  241 caagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  48823945 caagcattgtgacattgtgattggccaatgtcacccaactctatgtca 48823898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 1819527 - 1819573
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcat 247  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  1819527 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcat 1819573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 4609072 - 4609121
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  4609072 cacaagcattgtgacattgtgattgaccaatgtcacccaactctatgtca 4609121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 19711242 - 19711193
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  19711242 cacatgcattgtaacattgtgattggtcaatgtcacccaactctatgtca 19711193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 28928806 - 28928859
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaa 243  Q
    |||||||| |||||| ||||||||||| | ||||||||||||||||||||||||    
T  28928806 gtgacattggccaatcacaatgtcacagtgcttgtgaaagagagagaaacacaa 28928859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 46334008 - 46333959
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  46334008 cacaagcattgtgacattgtgattggccaatgtcatccaactctatgtca 46333959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 17127712 - 17127640
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    ||||| || ||||||||||||||||| | ||||||||||||||||  ||||| | ||||||||||| ||||||    
T  17127712 ggataacacttgggtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtg 17127640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 37155045 - 37155108
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    |||||||| |||||||| | ||||||| |||||||| |||||| ||||||||||||| ||||||    
T  37155045 ttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 37155108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 5694946 - 5695004
Alignment:
Q  220 cttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaa 278  Q
    ||||||||||||||||||||||||  ||| ||||||||| ||||  |||||||||||||    
T  5694946 cttgtgaaagagagagaaacacaaatattgtgacattgtaattgaccaatgtcacccaa 5695004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 28395630 - 28395699
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    |||||||||||| | |||||||||  ||||||| ||||||||  ||||| ||||||||||||| ||||||    
T  28395630 tagcatttgggtaacatagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 28395699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 28928841 - 28928792
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||| | ||||||||||||||| |||||||||| ||||||||||||    
T  28928841 cacaagcactgtgacattgtgattggccaatgtcaccaaactctatgtca 28928792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 32540893 - 32540824
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    ||||| |||||||| ||||| |||||||||||| ||||||||  ||||| ||||||| ||||| ||||||    
T  32540893 tagcacttgggtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgcttgtg 32540824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 37155122 - 37155167
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctat 284  Q
    |||||| ||| ||||||||||||||| |||||||||||||||||||    
T  37155122 cacaagtattgtgacattgtgattggccaatgtcacccaactctat 37155167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 38674567 - 38674518
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||||||||||| |||| ||||||||||| ||||||    
T  38674567 cacaagcattgtgacattgtgattggccaatatcacccaactccatgtca 38674518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 33219649 - 33219685
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||||||||||||||||||||| |||||||||||    
T  33219649 cacaagcattatgacattgtgattgatcaatgtcacc 33219685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 36290555 - 36290483
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    |||||| | |||||||| |||||||||| ||||||| ||| ||||  ||||| |||||||||||||| |||||    
T  36290555 ggatagtacttgggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtg 36290483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 48498526 - 48498442
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcac 274  Q
    ||||||||  ||||| ||||||| || || |||||||||||||||||||||||| |||| ||  ||| ||||||  |||||||||    
T  48498526 gtgacattgaccaatcacaatgttaccatgcttgtgaaagagagagaaacacaaacattgtggtattatgattgaccaatgtcac 48498442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 48993979 - 48993943
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||||||||||||||    
T  48993979 cacaagcattgtgacattgtgattggtcaatgtcacc 48993943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 9157388 - 9157435
Alignment:
Q  241 caagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||| ||| |||||||||| ||||||||| ||||||||||||||    
T  9157388 caagcattgtgatattgtgattgatcaatgtcaaccaactctatgtca 9157435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 274
Target Start/End: Complemental strand, 17127626 - 17127591
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcac 274  Q
    |||||||||| |||||||||||||||||||||||||    
T  17127626 cacaagcattgtgacattgtgattggtcaatgtcac 17127591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 36290463 - 36290428
Alignment:
Q  253 cattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||||| |||||||||||||||||||||||    
T  36290463 cattgtgattggccaatgtcacccaactctatgtca 36290428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 741564 - 741519
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctat 284  Q
    |||||||||| ||||||||||||||| |||||||||| || |||||    
T  741564 cacaagcattgtgacattgtgattgggcaatgtcacctaattctat 741519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 32157602 - 32157651
Alignment:
Q  240 acaagcattatgacattgtgattggtcaatgtcacccaactctatgtcat 289  Q
    ||||||||| ||||| ||||||||  |||||||||| |||||||||||||    
T  32157602 acaagcattgtgacactgtgattgaccaatgtcaccaaactctatgtcat 32157651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 47303471 - 47303520
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||| |||| ||||||||||||||  |||||||||| ||||||||||||    
T  47303471 cacaaacattgtgacattgtgattgaccaatgtcacctaactctatgtca 47303520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 48498491 - 48498539
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||  | |||||||||||||||||||||| ||||||||||||||    
T  48498491 cacaagcatggtaacattgtgattggtcaatgtca-ccaactctatgtca 48498539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 2573217 - 2573169
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtc 287  Q
    |||||||||| ||| ||||||||| |||||| |||| ||||||||||||    
T  2573217 cacaagcattgtgatattgtgattagtcaatatcactcaactctatgtc 2573169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 5995445 - 5995481
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| || |||||||||||||||||||||||    
T  5995445 cacaagcattgtggcattgtgattggtcaatgtcacc 5995481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 21630032 - 21630104
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    ||||| || ||| |||| ||| |||||| ||||||| ||||||||  ||||| ||||||||||||| ||||||    
T  21630032 ggatatcacttgcgtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 21630104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 29179659 - 29179623
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| |||||||||||||||||| |||||||    
T  29179659 cacaagcattgtgacattgtgattggtcagtgtcacc 29179623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 29371444 - 29371480
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| |||||||||||||||||||| |||||    
T  29371444 cacaagcattgtgacattgtgattggtcaatatcacc 29371480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 7050 - 7159
Alignment:
Q  166 gtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggt 265  Q
    |||| |||||||||| ||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||     
T  7050 gtgacatagagttgggtgacattggtgatattagccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattggc 7149  T
Q  266 caatgtcacc 275  Q
    ||||||||||    
T  7150 caatgtcacc 7159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 7194 - 7123
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    ||||| || ||| |||| |||||||||| ||||||| |||||||| |||||| ||||||||||||| ||||||    
T  7194 ggataacacttgtgtgacatagagttgg-tgacattggtgacattggccaatcacaatgtcacaatgcttgtg 7123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 1801445 - 1801566
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||||| |||||||||| ||||||| |||||||| |||||| |||||| |||||| |||||||||||||||||||||||| |||| || |||||||||    
T  1801445 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgat 1801544  T
Q  262 tggtcaatgtcacccaactcta 283  Q
    ||| ||||||||||||||||||    
T  1801545 tggccaatgtcacccaactcta 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 51046066 - 51046185
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    |||||||||| ||| |||||||||||||| ||| ||||||||   |||| | |||||||||||  ||||||||||||||||||||||||||||||| |||    
T  51046066 tagcatttggatgacatagagttggatgatattggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatggcat 51046165  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||| ||||||||||    
T  51046166 tgtgattggccaatgtcacc 51046185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 47677298 - 47677380
Alignment:
Q  206 acaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  47677298 acaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattgatcaatgtcacccaactctatgtca 47677380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 30476501 - 30476595
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctat 284  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||  |||||||||  ||||||||    
T  30476501 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcacataactctat 30476595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 41753103 - 41752990
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||||| |||||||||  ||||||| |||||||| |||||| |||||| |||||| ||||||||||||| |||||||||| |||| || |||||||||    
T  41753103 ttgggtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagaaagaaacacaaacattgtggcattgtgat 41753004  T
Q  262 tggtcaatgtcacc 275  Q
    ||| ||||||||||    
T  41753003 tggccaatgtcacc 41752990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 47492061 - 47492153
Alignment:
Q  177 ttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaat 269  Q
    |||| ||||||| |||||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  47492061 ttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaat 47492153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 50524841 - 50524730
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||||| |||||||||  ||||||| |||| ||||| |||| ||||||| || || |||||||||||||||||||||||| |||| ||||||| ||||    
T  50524841 ttgggtgacatagagttgagtgacattggtgatattagtcaatcacaatgttacgatgcttgtgaaagagagagaaacacaaacattgtgacattatgat 50524742  T
Q  262 tggtcaatgtca 273  Q
    ||||||||||||    
T  50524741 tggtcaatgtca 50524730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 153 - 275
Target Start/End: Original strand, 30734392 - 30734514
Alignment:
Q  153 ggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatga 252  Q
    |||||| | ||| |||| |||||||| | |||||||  |||||||  || || ||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  30734392 ggatagaacttgtgtgacatagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatga 30734491  T
Q  253 cattgtgattggtcaatgtcacc 275  Q
    |||||||||||| ||||||||||    
T  30734492 cattgtgattggccaatgtcacc 30734514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 33689287 - 33689214
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattg 263  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  33689287 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattg 33689214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 29031752 - 29031839
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||| ||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||  |||| ||||| ||||||||||||    
T  29031752 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtaattgaccaatatcacctaactctatgtca 29031839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 30580759 - 30580867
Alignment:
Q  166 gtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggt 265  Q
    |||| ||||| |||| ||||||| |||| |||  ||||| | |||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||      
T  30580759 gtgacatagaattgggtgacattggtgatattgaccaatcataatgtcacaatatttgtgaaagagatagaaacacaagcactgtgacattgtgattgac 30580858  T
Q  266 caatgtcac 274  Q
    |||||||||    
T  30580859 caatgtcac 30580867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 39385746 - 39385817
Alignment:
Q  221 ttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtcattca 292  Q
    |||||||||||||||||| ||||  ||| | ||||||||||||| |||||||||||||||||||||||||||    
T  39385746 ttgtgaaagagagagaaatacaaatattgtaacattgtgattggccaatgtcacccaactctatgtcattca 39385817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 43139747 - 43139821
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||    
T  43139747 caatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcattgtggcattgttattggccaatgtcacc 43139821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 49418729 - 49418806
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaa 278  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||| | ||||  |||||||||||||    
T  49418729 caatcacaatgtcataatatttgtgaaagagagagaaacacaagcattatgatattataattgaccaatgtcacccaa 49418806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 50550068 - 50550001
Alignment:
Q  208 aatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||| |||  |||||||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  50550068 aatgtcataatgtttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtcacc 50550001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 1801566 - 1801620
Alignment:
Q  234 agaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| |||| || |||||||||||| |||||||||||||||||||||||    
T  1801566 agaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtca 1801620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 45103102 - 45103180
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagaga 234  Q
    ||||| |||||||| |||||||||| ||||||| |||| |||   |||| ||||||||||||| |||||||||||||||    
T  45103102 tagcacttgggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatgcttgtgaaagagaga 45103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 33689252 - 33689301
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  33689252 cacaagcattgtgacattgtgattggccaatgtcacccaactcaatgtca 33689301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 47677317 - 47677268
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| |||||||||||| ||||||||||||| ||||||||||||    
T  47677317 cacaagcattgtgacattgtgatcggtcaatgtcaccaaactctatgtca 47677268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 18321761 - 18321677
Alignment:
Q  191 tgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    ||||||| | |||| ||||||||||||| | ||||||| ||||| |||||||| | || ||||||||||||||  ||||||||||    
T  18321761 tgacattggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtcacc 18321677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 51046212 - 51046149
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    |||||||| |||||||||||||||||| |||||||| |||||| |||||| || ||| ||||||    
T  51046212 ttgggtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtg 51046149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 30904354 - 30904289
Alignment:
Q  191 tgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacatt 256  Q
    ||||||||  |||| ||||| |||||||| || | ||||||||||||||||||||||| |||||||    
T  30904354 tgacattaatcaatcacaatatcacaatatttataaaagagagagaaacacaagcattgtgacatt 30904289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 43139771 - 43139722
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||||||||||  | |||||||||||||||||||||    
T  43139771 cacaagcattctgacattgtgattgaccgatgtcacccaactctatgtca 43139722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 1272557 - 1272506
Alignment:
Q  237 aacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||||| ||||| | ||||||| |||||||||| ||||||||||||    
T  1272557 aacacaagcattgtgacaatttgattggccaatgtcaccaaactctatgtca 1272506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 34060285 - 34060234
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatga 252  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||| ||||||||    
T  34060285 caatcacaatatcacaatacttatgaaagagagaaaaacacaaacattatga 34060234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 47492186 - 47492123
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    |||||||| |||||||||| ||||||| || | ||| |||||| ||||||||||||| ||||||    
T  47492186 ttgggtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtg 47492123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 49414505 - 49414548
Alignment:
Q  245 cattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||    
T  49414505 cattgtgacattgtaattggccaatgtcacccaactctatgtca 49414548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 55223325 - 55223270
Alignment:
Q  208 aatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattg 263  Q
    ||||||||||| ||||||||||||||||||||| ||| ||| | | ||||||||||    
T  55223325 aatgtcacaatgcttgtgaaagagagagaaacataagtattctaatattgtgattg 55223270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 18321727 - 18321777
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtcat 289  Q
    |||| ||||| ||||||||||||||  |||||||| |||||||||||||||    
T  18321727 cacatgcattgtgacattgtgattgaccaatgtcatccaactctatgtcat 18321777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 21024088 - 21024165
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagaga 234  Q
    |||||||||||||| ||| | ||| |||| ||| |||||||| | |||  ||||||||||||| |||||||||||||||    
T  21024088 tagcatttgggtgacataaaattg-atgatattggtgacattggtcaaacacaatgtcacaattcttgtgaaagagaga 21024165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 29031776 - 29031726
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtcat 289  Q
    |||||||||| ||||||||||||||  |||| ||||| |||||||||||||    
T  29031776 cacaagcattgtgacattgtgattgaccaatatcacctaactctatgtcat 29031726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 49418746 - 49418704
Alignment:
Q  246 attatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||||||||||||  |||| ||||||||||||||||||    
T  49418746 attatgacattgtgattgaccaatatcacccaactctatgtca 49418704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 30476536 - 30476487
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| ||||||||||||||| |||||||||| | |||| |||||    
T  30476536 cacaagcattgtgacattgtgattggccaatgtcacctagctctctgtca 30476487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 47492109 - 47492073
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  47492109 cacaagcattgtgacattgtgattggccaatgtcacc 47492073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 49696 - 49828
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| |||||||| |||||||||| |||||||  |||||||  ||||| ||||||||||||| ||||||||||| ||||||||||||||||| || |||    
T  49696 tagcacttgggtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgtggcat 49795  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||| |||||||||| ||||||||||||    
T  49796 tgtgattggccaatgtcacctaactctatgtca 49828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 49765 - 49731
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtca 273  Q
    |||||||||| ||||||||||||||||||||||||    
T  49765 cacaagcattgtgacattgtgattggtcaatgtca 49731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 24618594 - 24618726
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| ||| |||| |||||||||| ||||||| ||||||||   |||| ||||||||| ||| ||| ||||||||||||||||||||||||| ||||||    
T  24618594 tagcacttgagtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacat 24618693  T
Q  256 tgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||||||||| |||||||||||||||||||    
T  24618694 tgtgattggtcaacgtcacccaactctatgtca 24618726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 171 - 288
Target Start/End: Complemental strand, 12343230 - 12343113
Alignment:
Q  171 atagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatg 270  Q
    |||||||||| ||| ||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||   ||||    
T  12343230 atagagttgggtgagattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgactaatg 12343131  T
Q  271 tcacccaactctatgtca 288  Q
    ||||||||||||||||||    
T  12343130 tcacccaactctatgtca 12343113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 10521876 - 10521974
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  10521876 gtgacattggccaatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtgattgaccaatgtcactcaactctatgtca 10521974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 13043602 - 13043502
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    |||||||||||||| |||||||||  ||| ||| |||||||| || ||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  13043602 tagcatttgggtgacatagagttgagtgatattggtgacattggctaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattgtgacat 13043503  T
Q  256 t 256  Q
    |    
T  13043502 t 13043502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 31654385 - 31654322
Alignment:
Q  221 ttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctat 284  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  31654385 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctat 31654322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 17751047 - 17750928
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacat 255  Q
    ||||| ||| |||| |||||||||| ||| |||  ||||||| ||| || ||||||||||||| ||||||||||||||| ||| |||| |||| ||||||    
T  17751047 tagcacttgtgtgacatagagttgggtgatattgatgacattggccgatcacaatgtcacaatgcttgtgaaagagagataaatacaaacattgtgacat 17750948  T
Q  256 tgtgattggtcaatgtcacc 275  Q
    ||||||||  ||||||||||    
T  17750947 tgtgattgaccaatgtcacc 17750928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 551192 - 551277
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||| | |||| |||||| ||||||  |||||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  551192 gtgacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 551277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 2315342 - 2315429
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||| |||||||||||||  ||||||||||||| |||||| ||||||||||  |||||||||  ||||||||||| ||||||||||||    
T  2315342 caatcacaatgtcacaatgtttgtgaaagagagcgaaacataagcattatggtattgtgattattcaatgtcacctaactctatgtca 2315429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 24587556 - 24587488
Alignment:
Q  206 acaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcac 274  Q
    ||||||||||||| ||||||||| || |||||||||||||||| ||||||||||||||  |||||||||    
T  24587556 acaatgtcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcac 24587488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 7384481 - 7384552
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaa 227  Q
    ||||| || |||||||||||||||||||||||||||||||||  ||||| ||||||||| |||  |||||||    
T  7384481 tagcacttaggtgatatagagttggatgacattagtgacattgaccaatcacaatgtcataatgtttgtgaa 7384552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 24587454 - 24587523
Alignment:
Q  156 tagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtg 225  Q
    ||||| || ||||| |||||||||| |||||||||||||||| | |||| ||||||||||||| ||||||    
T  24587454 tagcacttaggtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 24587523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 10521908 - 10521862
Alignment:
Q  242 aagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  10521908 aagcattgtgacattgtgattggccaatgtcaccaaactctatgtca 10521862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 274
Target Start/End: Complemental strand, 7384550 - 7384515
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcac 274  Q
    ||||| ||||||||||||||||||||||||||||||    
T  7384550 cacaaacattatgacattgtgattggtcaatgtcac 7384515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Complemental strand, 13766781 - 13766751
Alignment:
Q  258 tgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||||||||||||||||||||||||    
T  13766781 tgattggtcaatgtcacccaactctatgtca 13766751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 17750892 - 17750957
Alignment:
Q  152 tggatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaat 218  Q
    ||||||||| ||| |||| ||||||||| |||||||| |||||||| | |||| |||||||||||||    
T  17750892 tggatagcacttgtgtgacatagagttg-atgacattggtgacattggtcaatcacaatgtcacaat 17750957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 2315366 - 2315325
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaact 280  Q
    ||||| |||| |||||||||||||| ||||||||||||||||    
T  2315366 cacaaacattgtgacattgtgattgatcaatgtcacccaact 2315325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Complemental strand, 24618660 - 24618627
Alignment:
Q  242 aagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||||||||||||||| |||||||||||    
T  24618660 aagcattatgacattgtgattgatcaatgtcacc 24618627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 12343176 - 12343212
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacc 275  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  12343176 cacaagcattgtgacattgtgattggccaatgtcacc 12343212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 190 - 288
Target Start/End: Complemental strand, 63868 - 63770
Alignment:
Q  190 gtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||| |||||| ||||||||||||| |||||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||    
T  63868 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtca 63770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 63833 - 63878
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctat 284  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||    
T  63833 cacaagcattgtgacattgtgattggccaatgtcacccaactctat 63878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 27219 - 27332
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgat 261  Q
    |||||||| |||||||||| |||||||||||| ||| |||||| ||||||||| ||| ||||||||||||||||||||| ||||||| || |||||||||    
T  27219 ttgggtgacatagagttgggtgacattagtgatattggccaatcacaatgtcataattcttgtgaaagagagagaaacagaagcattgtggcattgtgat 27318  T
Q  262 tggtcaatgtcacc 275  Q
    ||| |||| |||||    
T  27319 tggccaatatcacc 27332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 27359 - 27303
Alignment:
Q  162 ttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaat 218  Q
    ||||||||||||||||||| ||||||| |||| ||| |||||| |||||| ||||||    
T  27359 ttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaat 27303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 19113 - 19211
Alignment:
Q  154 gatagcatttgggtgatatagagttggatgacattagtgacattagccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcattatga 252  Q
    ||||||||||| |||| |||||||||| |||||||  ||| |||   |||| ||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  19113 gatagcatttgtgtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgcttgtggaagaaagagaaacacaaacattatga 19211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 2313 - 2266
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcatt 248  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  2313 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 2266  T

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Target: scaffold1033; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 2289 - 2338
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| |||||||||||||| |||||||| ||||| |||||||||    
T  2289 cacaagcattgtgacattgtgattgatcaatgtcgcccaattctatgtca 2338  T

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Target: scaffold1029 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 2313 - 2266
Alignment:
Q  201 caattacaatgtcacaatacttgtgaaagagagagaaacacaagcatt 248  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  2313 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 2266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 2289 - 2338
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    |||||||||| |||||||||||||| |||||||| ||||| |||||||||    
T  2289 cacaagcattgtgacattgtgattgatcaatgtcgcccaattctatgtca 2338  T

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Target: scaffold0481 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 2949 - 2900
Alignment:
Q  239 cacaagcattatgacattgtgattggtcaatgtcacccaactctatgtca 288  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||    
T  2949 cacaaacattgtgacattgtgattggtcaatatcacccaactctatgtca 2900  T

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Target: scaffold0481; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 2924 - 2972
Alignment:
Q  200 ccaattacaatgtcacaatacttgtgaaagagagagaaacacaagcatt 248  Q
    ||||| |||||||||||||  ||||||||||||||||||||||| ||||    
T  2924 ccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacatt 2972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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