View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7073_low_27 (Length: 312)
Name: NF7073_low_27
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 40660809 - 40660524
Alignment:
| Q |
15 |
acatcacagaagaaataggaagtaat-gaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagtttttta |
113 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40660809 |
acatcacagaagaaataggaagcaatagaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagtttttta |
40660710 |
T |
|
| Q |
114 |
ctactacctccggtttgttatacaatagacatcatgtacatttgttatgattgcaattaagcatgaagcacatgttaatgaggccagtctgctacttttt |
213 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40660709 |
ctactacctccggttttttatacaatagacatcatgtacatttgttatgattgcaattaagcatgaagcacatgttaatgaggccagtctgctacttttt |
40660610 |
T |
|
| Q |
214 |
gtctacttgattgtggttgtctttgttatttgatttcgagcaagttactcaaggggaaatagaagtgctgattattctggatttag |
299 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40660609 |
gtccacttgattgtggttgtctttgttatttgatttcgagcaagttactcaaggggaaatagaagtgcagattattctggatttag |
40660524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University