View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7073_low_3 (Length: 789)

Name: NF7073_low_3
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7073_low_3
NF7073_low_3
[»] chr3 (1 HSPs)
chr3 (18-782)||(52373397-52374161)


Alignment Details
Target: chr3 (Bit Score: 753; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 18 - 782
Target Start/End: Complemental strand, 52374161 - 52373397
Alignment:
Q  18 aaaaacataaatacactgatagaatcaggcatcacactgttctcatagatgtgagatcaatgagcttcgagtttctgcacctaaaactgaaccatttata 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52374161 aaaaacataaatatactgatagaatcaggcatcacactgttctcatagatgtgagatcaatgagcttcgagtttctgcacctaaaactgaaccatttata 52374062  T
Q  118 tgattaccattcttttccaactccacttttcttattacttcatgttttatcctcataacatcttttccaaacctcatctccatcaaaattttcatttttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52374061 tgattaccattcttttccaactccacttttcttattacttcatgttttatcctcataacatcttttccaaacctcatctccattaaaattttcatttttc 52373962  T
Q  218 catcaagaagcttctctttagcagcccatctttgcaatttcccagaagtagttttcggaacacattcactcttaaccaaaacaacccatccaacttctac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373961 catcaagaagcttctctttagcagcccatctttgcaatttcccagaagtagttttcggaacacattcactcttaaccaaaacaacccatccaacttctac 52373862  T
Q  318 accctctttcttcaaaacactttctttaattccttcgcaaacactcctcagaatcccttcatccaaatctttttccatcctttgcatctctgcaacaatt 417  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373861 accctctttcttcaaaacactttctttaattccttcgccaacactcctcagaatcccttcatccaaatctttttccatcctttgcatctctgcaacaatt 52373762  T
Q  418 acaaccgttgctaaaactttaaaagccgcaacacaacctcctcgtagtaactttgggaaactgttaaaaaccacagtctctatgtaatgtggttgaatct 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373761 acaaccgttgctaaaactttaaaagccgcaacacaacctcctcgtagtaactttgggaaactgttaaaaaccacagtctctatgtaatgtggttgaatct 52373662  T
Q  518 tttcaccattttgaagctgtatagtatcttgaattctaccagtaacaaagagatacctgttttctccttttacgattcctttgtcacccgttcgaagaaa 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373661 tttcaccattttgaagctgtatagtatcttgaattctaccagtaacaaagagatacctgttttctccttttacgattcctttgtcacccgttcgaagaaa 52373562  T
Q  618 acacttacgaactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagggtgaccaaggtaaccagaggcattacttggagatgaaacccaa 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373561 acacttacgaactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagggtgaccaaggtaaccagaggcattacttggagatgaaacccaa 52373462  T
Q  718 atttctccttcaacaccatcttcaacagcttcaagtgtttcttcattaacaaccatgatgtccat 782  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373461 atttctccttcaacaccatcttcaacagcttcaagtgtttcttcattaacaaccatgatgtccat 52373397  T

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