View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_low_31 (Length: 270)
Name: NF7073_low_31
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 73 - 260
Target Start/End: Complemental strand, 38818571 - 38818384
Alignment:
| Q |
73 |
ataatagtggctcgttcgctcataaatgaactcgaccacttgttagtcttgctacacgacacgagtctagggtgaagttgaagcagacacggtcaagtaa |
172 |
Q |
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| T |
38818571 |
ataatagtggctcgttcgttcataaatgaactcgaccacttgttagtcttgctacacgacacgagtctagggtgaagttgaagcagacacggtcaagtaa |
38818472 |
T |
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| Q |
173 |
agtcgacttaacaagtgattcaacataccatatctacggatggaaataaaaaaggagaactccgtgcctctttaccatctcattgatg |
260 |
Q |
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| T |
38818471 |
agtcgactttacaagtgattcaacataccatatctacggatggaaataaaaaaggagaactccgtgcctctttaccatcttattgatg |
38818384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 38818626 - 38818579
Alignment:
| Q |
11 |
cacacacgaccaaggaagaataaaagaa-caagaaaagtcttgcttgc |
57 |
Q |
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| T |
38818626 |
cacacacggccaaggaagaataaaaaaaacaagaaaagtcttgcttgc |
38818579 |
T |
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