View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7073_low_36 (Length: 243)

Name: NF7073_low_36
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7073_low_36
NF7073_low_36
[»] chr7 (7 HSPs)
chr7 (3-230)||(28428878-28429105)
chr7 (97-175)||(25102630-25102708)
chr7 (62-147)||(15673010-15673095)
chr7 (97-173)||(18503171-18503247)
chr7 (62-172)||(34703029-34703139)
chr7 (66-131)||(34183106-34183171)
chr7 (66-131)||(34203695-34203760)
[»] chr5 (8 HSPs)
chr5 (66-165)||(33134088-33134187)
chr5 (97-179)||(5868363-5868445)
chr5 (97-200)||(7883867-7883970)
chr5 (98-179)||(29860855-29860936)
chr5 (61-199)||(42683969-42684107)
chr5 (62-147)||(31077867-31077952)
chr5 (59-173)||(15922239-15922353)
chr5 (97-147)||(25347155-25347205)
[»] scaffold0957 (1 HSPs)
scaffold0957 (66-148)||(1674-1756)
[»] chr3 (3 HSPs)
chr3 (66-179)||(28457840-28457953)
chr3 (97-172)||(46663198-46663272)
chr3 (97-179)||(21495073-21495154)
[»] chr8 (5 HSPs)
chr8 (67-147)||(16456515-16456595)
chr8 (66-175)||(32962047-32962156)
chr8 (105-179)||(37246152-37246226)
chr8 (62-179)||(16295325-16295442)
chr8 (62-179)||(16303027-16303144)
[»] chr2 (4 HSPs)
chr2 (103-171)||(41595236-41595304)
chr2 (66-199)||(13349562-13349695)
chr2 (66-179)||(37485588-37485701)
chr2 (97-173)||(40619788-40619864)
[»] chr6 (5 HSPs)
chr6 (62-179)||(23404474-23404591)
chr6 (97-170)||(29979489-29979562)
chr6 (97-172)||(12255105-12255180)
chr6 (62-150)||(32329367-32329454)
chr6 (104-185)||(12267329-12267410)
[»] chr1 (5 HSPs)
chr1 (66-179)||(28622974-28623087)
chr1 (97-172)||(37347104-37347179)
chr1 (62-173)||(49549507-49549618)
chr1 (97-199)||(48527351-48527453)
chr1 (97-150)||(46239074-46239127)
[»] chr4 (6 HSPs)
chr4 (66-177)||(34513815-34513926)
chr4 (66-176)||(28115987-28116097)
chr4 (104-175)||(3767727-3767798)
chr4 (97-147)||(17702147-17702197)
chr4 (66-148)||(34940309-34940391)
chr4 (98-131)||(53923754-53923787)
[»] scaffold0702 (1 HSPs)
scaffold0702 (66-164)||(4035-4132)
[»] scaffold0662 (1 HSPs)
scaffold0662 (66-164)||(3970-4067)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 28429105 - 28428878
Alignment:
Q  3 aactaaggtatgaatttagactcctattagtaaagtttctaacctaacatatatgtaaaatataaattacaaaagcaagttaggataagattacaaaata 102  Q
    |||||||| ||||||||| | ||||||||| | | |||| |||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||    
T  28429105 aactaaggaatgaatttataatcctattaggataatttcaaacctaacatatatttaaaatataaattacaaagataagttaggataagattacaaaata 28429006  T
Q  103 gtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcataactatcaaacatg 202  Q
     |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28429005 atttattttatcctatttctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcgtatcataactatcaaacatg 28428906  T
Q  203 acatttgtcctaattcctccttgatgtc 230  Q
    ||||||||||||||||||||||||||||    
T  28428905 acatttgtcctaattcctccttgatgtc 28428878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 25102708 - 25102630
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcat 175  Q
    |||||| |||||||||||| |||| |||||||||| |||||| ||||||||  |  ||||||||||| |||||||||||    
T  25102708 aaaataatttattttatcctatctatttggtgcatcaaacatgagatttaagtagaatgtgataaatatatcatatcat 25102630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 15673010 - 15673095
Alignment:
Q  62 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaa 147  Q
    ||||||||| |||| | |||| |||||| |||   ||||| ||||||||||||| ||||||||||||||| |||||| ||||||||    
T  15673010 atataaattgcaaaggaaagtcaggatatgataggaaaatggtttattttatcctatctctttggtgcatcaaacatgagatttaa 15673095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 18503171 - 18503247
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatc 173  Q
    ||||| ||||||||||||| ||||||||||||||| |||||| | |||||| || ||| |||| ||| |||||||||    
T  18503171 aaaatggtttattttatcctatctctttggtgcatcaaacatgatatttaagcaggatatgattaatgtatcatatc 18503247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 34703139 - 34703029
Alignment:
Q  62 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataa 161  Q
    |||||||||||||| | |||| |||||| |||   ||||||||||||||||||  ||   |||||||||| ||||||  ||||||| || ||| |||| |    
T  34703139 atataaattacaaaggaaagtcaggatatgataggaaaatagtttattttatcatatacttttggtgcatcaaacatgtgatttaagcaggatatgatta 34703040  T
Q  162 atttatcatat 172  Q
    || ||||||||    
T  34703039 atgtatcatat 34703029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 34183171 - 34183106
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcat 131  Q
    |||||| ||| |||||| |||||| |||   ||||||||||||||||||| |||||||| ||||||    
T  34183171 aaattataaaggcaagtcaggataggatagaaaaatagtttattttatcctatctctttagtgcat 34183106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 34203760 - 34203695
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcat 131  Q
    |||||| ||| |||||| |||||| |||   ||||||||||||||||||| |||||||| ||||||    
T  34203760 aaattataaaggcaagtcaggataggatagaaaaatagtttattttatcctatctctttagtgcat 34203695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 33134187 - 33134088
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 165  Q
    |||||||||| | |||| |||||| |||   ||||| ||||||||||||| ||| ||||||||||||||||||||||||||| || ||| |||| |||||    
T  33134187 aaattacaaaggaaagtcaggataggataggaaaatggtttattttatcctatccctttggtgcattaaacataagatttaagcaggatatgattaattt 33134088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 5868363 - 5868445
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtct 179  Q
    ||||| ||||||||||||| ||||||||||||||| |||||| ||||||||  | |||||||| ||| ||||||||| |||||    
T  5868363 aaaatggtttattttatcctatctctttggtgcatcaaacatgagatttaagtaggatgtgattaatatatcatatcttgtct 5868445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 7883867 - 7883970
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcataactatca 196  Q
    ||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||| || ||| |||| ||| ||||||||| ||||| | |||| | || ||||    
T  7883867 aaaatggtttattttatcctatccctttgatgcatcaaacataagatttaagcaggatatgattaatgtatcatatcctgtctccctatcctgaccatca 7883966  T
Q  197 aaca 200  Q
    ||||    
T  7883967 aaca 7883970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 29860936 - 29860855
Alignment:
Q  98 aaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtct 179  Q
    |||| ||||||||||||| ||||||||||||||| |||||| | |||||| ||  || |||| ||| |||||||||||||||    
T  29860936 aaatggtttattttatcctatctctttggtgcatcaaacatgaaatttaagcagaatatgattaatgtatcatatcatgtct 29860855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 42683969 - 42684107
Alignment:
Q  61 aatataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgata 160  Q
    |||| |||||||||| | |||| |||||| |||   |||||  |||||||||||  ||| ||||| ||| | |||||| |||||||| || ||| ||||     
T  42683969 aatagaaattacaaaggaaagtcaggatatgatagaaaaatgatttattttatcttatccctttgatgcttgaaacatgagatttaagcaggatatgatt 42684068  T
Q  161 aatttatcatatcatgtcttcatatcataactatcaaac 199  Q
    ||| ||||||||||||||| | |||| |||| |||||||    
T  42684069 aatgtatcatatcatgtctccctatcctaaccatcaaac 42684107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 31077952 - 31077867
Alignment:
Q  62 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaa 147  Q
    |||||||||||||| | |||| | ||||  || | ||||||||||||||||||| | | ||||||||||| |||||| ||||||||    
T  31077952 atataaattacaaaggaaagtcatgatagaataagaaaatagtttattttatcctaaccctttggtgcatcaaacattagatttaa 31077867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 15922239 - 15922353
Alignment:
Q  59 aaaatataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtga 158  Q
    |||||| |||||||||| | |||| | |||| |||   |||||| |||||||||||  ||| ||||| ||||| |||||| |||||||| || ||| |||    
T  15922239 aaaatagaaattacaaaggaaagtcatgatatgatagaaaaataatttattttatcatatcactttgatgcatcaaacatgagatttaagcaagatatga 15922338  T
Q  159 taaatttatcatatc 173  Q
    | ||| |||||||||    
T  15922339 ttaatgtatcatatc 15922353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 25347155 - 25347205
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaa 147  Q
    ||||| ||||||||||||| ||| ||||||||||| |||||| ||||||||    
T  25347155 aaaatggtttattttatcctatccctttggtgcatcaaacatgagatttaa 25347205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 1756 - 1674
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaa 148  Q
    ||||||||||| ||||||||||||||||   |||||  ||||||| |||| ||||||||||||||  ||||||||||||||||    
T  1756 aaattacaaaaccaagttaggataagatagaaaaatgatttatttcatcctatctctttggtgcaccaaacataagatttaaa 1674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 28457840 - 28457953
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 165  Q
    |||||||||| | ||||| |||||||||   ||||| ||||||||||||  ||| ||||||||||| ||||| ||||||||| || ||| |||| ||| |    
T  28457840 aaattacaaaggaaagttgggataagatagaaaaatggtttattttatcatatcactttggtgcatcaaacacaagatttaagcaggatatgattaatgt 28457939  T
Q  166 atcatatcatgtct 179  Q
    |||||||| |||||    
T  28457940 atcatatcctgtct 28457953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 46663272 - 46663198
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatat 172  Q
    |||||||||||| | |||| |||| |||||||||| ||| || ||||||||||||||| |||||||| ||||||||    
T  46663272 aaaatagtttatat-atcctatctgtttggtgcatcaaatatgagatttaaacatgatatgataaatgtatcatat 46663198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 21495154 - 21495073
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtct 179  Q
    ||||| ||||||||||||| |||  |||||||||| |||||| |||||| |||| ||| |||| ||| |||||||||||||||    
T  21495154 aaaatcgtttattttatcctatcaatttggtgcatcaaacatgagattt-aacaagatatgattaatatatcatatcatgtct 21495073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 16456595 - 16456515
Alignment:
Q  67 aattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaa 147  Q
    |||||||||||||| | |||||| ||| | ||||||||||||||||||  ||||||||||||||| |||||| | ||||||    
T  16456595 aattacaaaagcaaatcaggataggataaaaaaatagtttattttatcttatctctttggtgcatcaaacatgatatttaa 16456515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 32962156 - 32962047
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 165  Q
    |||||||||| | |||| |||||| |||   ||||||||||||||||| | ||| | ||||||||| |||||| |||||||| || ||| |||| ||| |    
T  32962156 aaattacaaaggaaagtcaggatatgataggaaaatagtttattttattctatcccattggtgcatcaaacatgagatttaagcaggatatgattaatgt 32962057  T
Q  166 atcatatcat 175  Q
    ||||||||||    
T  32962056 atcatatcat 32962047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 37246226 - 37246152
Alignment:
Q  105 ttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtct 179  Q
    ||||||||||| |||| ||| |||||| |||||| | |||||| || ||| |||| ||| |||||||||||||||    
T  37246226 ttattttatcctatctttttagtgcatcaaacatgatatttaagcaggatatgattaatgtatcatatcatgtct 37246152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 179
Target Start/End: Complemental strand, 16295442 - 16295325
Alignment:
Q  62 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataa 161  Q
    |||||||||||||| | |||| |||||| |||    |||| ||||||| ||| | |||||||| |||||| |||||| | |||||| || ||| |||| |    
T  16295442 atataaattacaaaggaaagtcaggatatgatagggaaattgtttattgtatgctatctctttagtgcatcaaacatgatatttaagcaggatatgatta 16295343  T
Q  162 atttatcatatcatgtct 179  Q
    || |||||||| ||||||    
T  16295342 atgtatcatattatgtct 16295325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 179
Target Start/End: Complemental strand, 16303144 - 16303027
Alignment:
Q  62 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataa 161  Q
    |||||||||||||| | |||| |||||| |||    |||| ||||||| ||| | |||||||| |||||| |||||| | |||||| || ||| |||| |    
T  16303144 atataaattacaaaggaaagtcaggatatgatagggaaattgtttattgtatgctatctctttagtgcatcaaacatgatatttaagcaggatatgatta 16303045  T
Q  162 atttatcatatcatgtct 179  Q
    || |||||||| ||||||    
T  16303044 atgtatcatattatgtct 16303027  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 41595304 - 41595236
Alignment:
Q  103 gtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcata 171  Q
    ||||||||||||||||||||||||||||| |||||| |||||||| || ||| |||| ||| |||||||    
T  41595304 gtttattttatccaatctctttggtgcatcaaacatgagatttaagcacgatatgattaatgtatcata 41595236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 13349562 - 13349695
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 165  Q
    |||||||||| | ||||||||| | ||| | || || ||||||||||||| |||  |||||||||| |||||| ||||||||  | ||| | || ||| |    
T  13349562 aaattacaaaggaaagttaggagaggataagaatattgtttattttatcctatccatttggtgcatcaaacatgagatttaagtaggatataattaatgt 13349661  T
Q  166 atcatatcatgtcttcatatcataactatcaaac 199  Q
    |||||||| ||||||| |||| | ||||||||||    
T  13349662 atcatatcctgtcttcctatcctgactatcaaac 13349695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 37485701 - 37485588
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 165  Q
    |||||||||| | |||| |||||| |||   ||||| ||||||||||||  |||| |||||||||| |||||| |||||||| || ||| |||| ||| |    
T  37485701 aaattacaaaggaaagtcaggatatgataggaaaatggtttattttatcatatctttttggtgcatcaaacatgagatttaagcaggatatgattaatat 37485602  T
Q  166 atcatatcatgtct 179  Q
    || ||||| |||||    
T  37485601 attatatcttgtct 37485588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 40619788 - 40619864
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatc 173  Q
    ||||| ||||||||||||  ||| ||||||||||| |||||| |||||||| || ||| |||| ||| |||||||||    
T  40619788 aaaatggtttattttatcatatccctttggtgcatcaaacatgagatttaagcaggatatgattaatgtatcatatc 40619864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 179
Target Start/End: Complemental strand, 23404591 - 23404474
Alignment:
Q  62 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataa 161  Q
    |||||||||||||| | |||| |||||| |||    |||| ||||||||||||| ||||||||||||||| |||||| | |||||  || ||| | || |    
T  23404591 atataaattacaaaggaaagtcaggatatgatatggaaatggtttattttatcctatctctttggtgcatcaaacatgaaatttatgcaggatattatta 23404492  T
Q  162 atttatcatatcatgtct 179  Q
    || |||||||||||||||    
T  23404491 atgtatcatatcatgtct 23404474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 29979489 - 29979562
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcat 170  Q
    ||||| ||||||||||||  ||| ||||||||||| |||||| ||||||||||||||| |||| ||| ||||||    
T  29979489 aaaatggtttattttatcatatccctttggtgcatcaaacatgagatttaaacatgatatgattaatgtatcat 29979562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 12255180 - 12255105
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatat 172  Q
    ||||| ||||||||||||| ||| ||||||||||| |||||| |||||||| || ||| |||| ||| ||||||||    
T  12255180 aaaatggtttattttatcccatccctttggtgcatcaaacatgagatttaagcaggatatgattaatgtatcatat 12255105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 32329454 - 32329367
Alignment:
Q  62 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaaca 150  Q
    |||||||||||||| | |||| ||||||||||   ||||| ||||||||||||  ||| ||||||||||| ||||||  ||||||||||    
T  32329454 atataaattacaaaggaaagtcaggataagatatgaaaatggtttattttatcatatc-ctttggtgcatcaaacatgcgatttaaaca 32329367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 12267410 - 12267329
Alignment:
Q  104 tttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatat 185  Q
    ||||||| |||  |||| |||||||||| |||||||| ||||||||| ||| | || ||| ||| ||||||||||| |||||    
T  12267410 tttatttcatcatatctgtttggtgcatcaaacataaaatttaaacaggatataattaatatataatatcatgtctccatat 12267329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 28622974 - 28623087
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 165  Q
    |||||||||| | |||| |||||| |||   ||||||||||||||||| | ||| ||||||||||| ||||||   ||||||| | ||| |||| ||| |    
T  28622974 aaattacaaaggaaagtcaggataggatagaaaaatagtttattttattctatccctttggtgcatcaaacatggaatttaaataggatatgattaatgt 28623073  T
Q  166 atcatatcatgtct 179  Q
    ||||||||||||||    
T  28623074 atcatatcatgtct 28623087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 37347104 - 37347179
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatat 172  Q
    ||||| ||||||||||||  ||| ||||||||||| ||||||||||||||| || ||| |||| ||| ||||||||    
T  37347104 aaaatggtttattttatcatatccctttggtgcatcaaacataagatttaagcaagatatgattaatgtatcatat 37347179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 49549618 - 49549507
Alignment:
Q  62 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataa 161  Q
    |||||||||||||| | |||| |||||| |||    ||||  |||||||||||| ||| ||||||||||| ||| || |||||||| || ||| |||| |    
T  49549618 atataaattacaaaggaaagtcaggatatgatagggaaatgatttattttatcctatccctttggtgcatcaaatatgagatttaagcaggatatgatta 49549519  T
Q  162 atttatcatatc 173  Q
    || |||||||||    
T  49549518 atgtatcatatc 49549507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 48527453 - 48527351
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcataactatca 196  Q
    ||||| ||||||||||||  |||| |||| ||||| |||||| | |||||| || ||| |||||||| ||||||||| | ||| |||| |||||  ||||    
T  48527453 aaaattgtttattttatcatatctttttgatgcatcaaacatgaaatttaagcaagatatgataaatatatcatatcctttctacataccataatcatca 48527354  T
Q  197 aac 199  Q
    |||    
T  48527353 aac 48527351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 46239127 - 46239074
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaaca 150  Q
    ||||| ||||||||||||| ||||||||| ||||| | ||||| ||||||||||    
T  46239127 aaaattgtttattttatcctatctctttgatgcatcatacataggatttaaaca 46239074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 34513815 - 34513926
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 165  Q
    |||||||||| | |||| |||||| |||   ||||| ||||||||||||| |||  |||||||||| |||||| |||||||| || ||| | || ||| |    
T  34513815 aaattacaaaggaaagtcaggatatgatagaaaaatggtttattttatcctatccatttggtgcatcaaacatgagatttaagcaggatataattaatgt 34513914  T
Q  166 atcatatcatgt 177  Q
    ||||||||||||    
T  34513915 atcatatcatgt 34513926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 28115987 - 28116097
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 165  Q
    |||||||||| | ||||||||||| |||   ||||| ||||||||||||  ||| ||| ||||||| ||| || |||||||| ||| || |||| ||| |    
T  28115987 aaattacaaaggaaagttaggataggataggaaaatggtttattttatcttatcacttaggtgcatcaaatatgagatttaagcataatatgattaatgt 28116086  T
Q  166 atcatatcatg 176  Q
    |||||||||||    
T  28116087 atcatatcatg 28116097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 3767798 - 3767727
Alignment:
Q  104 tttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcat 175  Q
    |||||||||||| ||| ||||||||||| |||||| | |||||| || ||| |||| ||| |||||||||||    
T  3767798 tttattttatcctatcactttggtgcatcaaacatgaaatttaagcaggatatgattaatgtatcatatcat 3767727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 17702197 - 17702147
Alignment:
Q  97 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaa 147  Q
    |||| |||||||||||||  ||||||||||||||| |||||| ||||||||    
T  17702197 aaaacagtttattttatcttatctctttggtgcatcaaacatgagatttaa 17702147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 34940391 - 34940309
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaa 148  Q
    |||||||||| | |||| |||||| |||   ||||| ||||||||||||| |||  |||||||||| |||||| |||||||||    
T  34940391 aaattacaaaggaaagtcaggataggatatgaaaatggtttattttatcctatccttttggtgcatcaaacatgagatttaaa 34940309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 53923787 - 53923754
Alignment:
Q  98 aaatagtttattttatccaatctctttggtgcat 131  Q
    |||||||||||||||||| |||||||||||||||    
T  53923787 aaatagtttattttatcctatctctttggtgcat 53923754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 4035 - 4132
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatt 164  Q
    ||||||||||   |||||||||||||||    |||||||||||||||||| | ||||||||||||| |||||| | |||||| |  ||| |||||||||    
T  4035 aaattacaaagataagttaggataagataggtaaatagtttattttatcc-acctctttggtgcatcaaacatgatatttaagccggatatgataaatt 4132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 4067 - 3970
Alignment:
Q  66 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatt 164  Q
    ||||||||||   |||||||||||||||    |||||||||||||||||| | ||||||||||||| |||||| | |||||| |  ||| |||||||||    
T  4067 aaattacaaagataagttaggataagataggtaaatagtttattttatcc-acctctttggtgcatcaaacatgatatttaagccggatatgataaatt 3970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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