View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_low_38 (Length: 243)
Name: NF7073_low_38
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8193322 - 8193091
Alignment:
| Q |
1 |
actgtgcaattcacatggtgatacaaaatcataccgactcataaatgtatcagcgcaactcaaagcaacctaggatccatcacatgaaacaaatttctgg |
100 |
Q |
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| T |
8193322 |
actgtgcaattcacatggtgatacaaaataataccgactcataaatgtatcagcgcaactcaaagcaacctaggatccatcacatgaaacaaatttctgg |
8193223 |
T |
|
| Q |
101 |
ttttccaaattggattgcaatccacaattctaaagaccatactgaaacaagacgtggaggcattaaaaaagaaaagcacttggtaagaaaagtgagaccc |
200 |
Q |
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| T |
8193222 |
ttttccaaattggattgcaatccacaattctaaagaccatactgaaacaagacatggaggcattaaaaaggaaaagcacttggtaagaaaagtgagaccc |
8193123 |
T |
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| Q |
201 |
aaacttccatcctttccccagatatatgatgt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
8193122 |
aaacttccatcctttccccagatatatgatgt |
8193091 |
T |
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