View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_low_4 (Length: 728)
Name: NF7073_low_4
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 718
Target Start/End: Complemental strand, 31328509 - 31327787
Alignment:
| Q |
1 |
agtctttttggggatttagtagaagcaaaagtctcaattgtgatacaaagaagaatttgagtttttctttacctcctttgtatagaagtaactcaactgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328509 |
agtctttttggggatttagtagaagcaaaagtctcaattgtgatacaaagaagaatttgagtttttctttacctcctttgtatagaagtaactcaactgg |
31328410 |
T |
|
| Q |
101 |
ttcggcgnnnnnnntgagttcaaacaagcaaacatcatcagcaacaacaaaatcatcatcatggtctaacataaatttgtatcctatgcaaaaatctaat |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328409 |
ttcggcgaaaaaaatgagttcaaacaagcaaacatcatcagcaacaacaaaatcatcatcatggtctaacataaatttgtatcctatgcaaaaatctaat |
31328310 |
T |
|
| Q |
201 |
tcaggtaagagttatggaggatcttatggaaatggtcattggattagtcctgttctaaatgcaccaactccttgtgtttcaaagggaagtgcaaatttct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31328309 |
tcaggtaagagttatggaggatcttatggaaatggtcattggattagtcctgttctaaatgtaccaactccttgtgtttcaaagggaagtgcaaatttct |
31328210 |
T |
|
| Q |
301 |
ttaggtttggttcgtttttaagcattggaaaggttaagaagaataagaagtgattttgttcatatgtatcacaatcatatcataacatattataatgtaa |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328209 |
ttaggtttggttcgtttttaagtattggaaaggttaagaagaataagaagtgattttgttcatatgtatcacaatcatatcataacatattataatgtaa |
31328110 |
T |
|
| Q |
401 |
tggtttcatctttcttgttatcatatttannnnnnngttctgaacaatgaagttaattagattggtttgttatgattatttcatgtattcatcttggctt |
500 |
Q |
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| T |
31328109 |
tagtttcatctttcttgttatcatatttatttttttgttctgaacaatgaagttaattagattggtttgttttgattatttcatgtattcatcttggctt |
31328010 |
T |
|
| Q |
501 |
gttattttgtcatagaggtttggttagcatagtaataggctcggtttggataaacaatttaactaagtgttaatagcataatctctgttacaccaacact |
600 |
Q |
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|||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328009 |
gttattatgtcatagagg-ttagttagcatagtaataggctcagtttggataaacaatttaactaagtgttaatagcataatctctgttacaccaacact |
31327911 |
T |
|
| Q |
601 |
tctgattgaatgtgtgtttcagtgtccgacgctgac-----acgacacttgtgattgcattaaattacgtcannnnnnnaaaa-ttttatcggtgttgac |
694 |
Q |
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|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| || | |||| |||||| | ||||||| |
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| T |
31327910 |
tctgattgaatgtgtgttccactgtccgacgctgacacgatacgacacttgtgattgcattaaattatgtaattttcttaaaatttttattgatgttgac |
31327811 |
T |
|
| Q |
695 |
gtgtcagtattgtgtctgatgtcc |
718 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
31327810 |
gtgtcagtattgtgtctgatgtcc |
31327787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 583 - 638
Target Start/End: Complemental strand, 13484127 - 13484072
Alignment:
| Q |
583 |
ctctgttacaccaacacttctgattgaatgtgtgtttcagtgtccgacgctgacac |
638 |
Q |
| |
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||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||| |
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| T |
13484127 |
ctctgttgcaccaacacttctgattgaatgcatgttccagtgtccgacactgacac |
13484072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 586
Target Start/End: Complemental strand, 17125818 - 17125776
Alignment:
| Q |
544 |
gtttggataaacaatttaactaagtgttaatagcataatctct |
586 |
Q |
| |
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||||||||||||||||| | |||||| |||||||||||||||| |
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| T |
17125818 |
gtttggataaacaattttattaagtgctaatagcataatctct |
17125776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 699
Target Start/End: Original strand, 26915230 - 26915307
Alignment:
| Q |
622 |
gtgtccgacgctgacacgacacttgtgattgcattaaattacgtcannnnnnnaaaattttatcggtgttgacgtgtc |
699 |
Q |
| |
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||||||||| | |||||||||||||||||| |||||||||| |||| ||||||||||| |||| |||||||| |
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| T |
26915230 |
gtgtccgacaccgacacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtc |
26915307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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