View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_low_40 (Length: 241)
Name: NF7073_low_40
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 23188825 - 23188675
Alignment:
| Q |
64 |
tttgctttctagtccggtaaacaaataggcaaagcagtaaaagaaatagtagaaatgagatcaaaataacaattactagtagattcctcttcctgtttcc |
163 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
23188825 |
tttgctttctagttcggtaaacaaataggcaaagcagtaaaagaaatagtagaaatgagatcaaaataacaattataagtagattcctcttcccgtttcc |
23188726 |
T |
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| Q |
164 |
atgccttccaattgcattagaatctaaacaagagaattgtcaattagcaaa |
214 |
Q |
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|| ||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
23188725 |
ttgtcttccaattgcattagaatctgaagaagagaattgtcaattagcaaa |
23188675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 23180640 - 23180483
Alignment:
| Q |
64 |
tttgctttctagtccggtaaacaaataggcaaagcagtaaaagaaatagtagaaatgagatcaaaataacaattactagtagattcctcttcctgtttcc |
163 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
23180640 |
tttgctttctagtccggtaaacaaataggcaaaccagtacaagaaatagtagaaatgagatcaaaataacaattacaagtagattcctcttcccgtttcc |
23180541 |
T |
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| Q |
164 |
atgccttccaattgcattagaatctaaacaagagaattgtcaattagcaaaattcttc |
221 |
Q |
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||| ||||||||||||||||||||| || | ||||||| |||||||||||||| |||| |
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| T |
23180540 |
atgtcttccaattgcattagaatctgaaaaggagaattatcaattagcaaaatacttc |
23180483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 21181170 - 21181285
Alignment:
| Q |
64 |
tttgctttctagtccggtaaacaaataggcaaagcagtaaaagaaatagtagaaatgagatcaaaataacaattactagtagattcctcttcctgtttcc |
163 |
Q |
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||||||||||||||| ||||||||||| | || ||||| ||| |||| |||||||||||||||| || |||||| | ||||||||||||||||||| | |
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| T |
21181170 |
tttgctttctagtccagtaaacaaataaaccaatcagtataagcaatattagaaatgagatcaaagtagcaattagaattagattcctcttcctgttttc |
21181269 |
T |
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| Q |
164 |
atgccttccaattgca |
179 |
Q |
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||| ||||||| |||| |
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| T |
21181270 |
atgtcttccaactgca |
21181285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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