View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7073_low_42 (Length: 228)

Name: NF7073_low_42
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7073_low_42
NF7073_low_42
[»] chr3 (4 HSPs)
chr3 (1-228)||(11015126-11015353)
chr3 (1-228)||(11005563-11005790)
chr3 (1-228)||(11024138-11024365)
chr3 (1-220)||(47451543-47451768)
[»] chr4 (33 HSPs)
chr4 (1-206)||(45371731-45371936)
chr4 (22-220)||(48852901-48853099)
chr4 (7-206)||(48147370-48147575)
chr4 (36-223)||(48156069-48156262)
chr4 (19-206)||(45365877-45366070)
chr4 (91-220)||(49043811-49043940)
chr4 (118-220)||(49038521-49038623)
chr4 (159-220)||(7773468-7773529)
chr4 (159-220)||(7878740-7878801)
chr4 (39-141)||(43596153-43596255)
chr4 (163-220)||(7790441-7790498)
chr4 (163-220)||(7813838-7813895)
chr4 (163-220)||(7908663-7908720)
chr4 (162-206)||(48864395-48864439)
chr4 (87-206)||(48903237-48903359)
chr4 (94-202)||(49048216-49048323)
chr4 (160-206)||(45384549-45384595)
chr4 (167-220)||(7771760-7771813)
chr4 (163-220)||(7800998-7801055)
chr4 (8-61)||(49043997-49044050)
chr4 (6-81)||(48705170-48705245)
chr4 (57-220)||(50666561-50666733)
chr4 (112-220)||(7237386-7237500)
chr4 (20-133)||(45384634-45384747)
chr4 (163-202)||(7766003-7766042)
chr4 (110-149)||(7878048-7878087)
chr4 (163-206)||(48861649-48861692)
chr4 (162-220)||(48863625-48863683)
chr4 (163-220)||(7786825-7786882)
chr4 (73-150)||(37826709-37826786)
chr4 (25-141)||(50250454-50250572)
chr4 (101-154)||(50669378-50669431)
chr4 (172-220)||(37826633-37826681)
[»] chr6 (3 HSPs)
chr6 (1-206)||(21016020-21016225)
chr6 (23-80)||(21979420-21979477)
chr6 (166-206)||(21979285-21979325)
[»] chr8 (2 HSPs)
chr8 (7-202)||(4962180-4962385)
chr8 (161-206)||(4031583-4031628)
[»] chr5 (4 HSPs)
chr5 (85-220)||(9120040-9120181)
chr5 (85-207)||(179335-179463)
chr5 (154-206)||(29688481-29688533)
chr5 (162-206)||(42561990-42562034)
[»] chr1 (5 HSPs)
chr1 (28-220)||(24340634-24340829)
chr1 (28-220)||(24352999-24353194)
chr1 (168-220)||(24367531-24367583)
chr1 (161-220)||(24310575-24310634)
chr1 (161-220)||(24416137-24416196)
[»] chr7 (1 HSPs)
chr7 (161-220)||(48884183-48884242)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 11015353 - 11015126
Alignment:
Q  1 ttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11015353 ttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctat 11015254  T
Q  101 agattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11015253 agattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcg 11015154  T
Q  201 tcttgggttaaaactcttgtcctatcta 228  Q
    ||||||||||||||||||||||||||||    
T  11015153 tcttgggttaaaactcttgtcctatcta 11015126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 11005790 - 11005563
Alignment:
Q  1 ttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||  ||||||||||    
T  11005790 ttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccatatggttttgatcatgaacctat 11005691  T
Q  101 agattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcg 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  11005690 agattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcg 11005591  T
Q  201 tcttgggttaaaactcttgtcctatcta 228  Q
    ||||||  |||  |||||||| ||||||    
T  11005590 tcttggactaaggctcttgtcttatcta 11005563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 11024365 - 11024138
Alignment:
Q  1 ttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctat 100  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||    
T  11024365 ttcgcaatgatttatcaatggatgttattattgcctttgatttagtggaaagggaacttttggagatgccttttccagatggttttgatcatgaacctat 11024266  T
Q  101 agattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcg 200  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||| || || |||| ||||||||||||||||||||||||||||||||||||||    
T  11024265 ggattgtgatttgtggatatttggagaatttctcagtctatgggctatggggggtgtaacaattgaaatatgggttatgaaagaatacaaagtgcattcg 11024166  T
Q  201 tcttgggttaaaactcttgtcctatcta 228  Q
    ||||||  ||| ||||||||||||||||    
T  11024165 tcttggactaagactcttgtcctatcta 11024138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 47451768 - 47451543
Alignment:
Q  1 ttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctat 100  Q
    |||| |||||| |||| ||| ||||||||| ||  ||||||||| ||||||| ||| |||| ||  || |||| ||||||| ||||||| |||||||||     
T  47451768 ttcgtcatgatatatccatgaatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgccagatgattttgaccatgaacctac 47451669  T
Q  101 agattgtgatttgtggatatttggagaatttctaagtctatgggctatgg------aggatggaacagttgaaatatgggttatgaaagaatacaaagtg 194  Q
      |||||| ||||||| |||||||||||||||| |||||| ||| | |||      |  |||  | ||||||||||||||| |||||||||||||||||     
T  47451668 caattgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagtt 47451569  T
Q  195 cattcgtcttgggttaaaactcttgt 220  Q
     ||||||||||||  || ||||||||    
T  47451568 aattcgtcttgggaaaagactcttgt 47451543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 45371936 - 45371731
Alignment:
Q  1 ttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctat 100  Q
    |||| ||||||||||| |||  ||||||| ||| |||||||||| ||||| |||||||||| ||||||  ||| || ||||||||||||  ||  ||||     
T  45371936 ttcgtcatgatttatcgatgagtgttattcttgcctttgatttaatggaacggaaacttttagagatgtctttgcctgatggttttgaccctggtcctac 45371837  T
Q  101 agattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcg 200  Q
    | |||||||||| ||| |||| ||| ||||||| ||||| ||||||| | |||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  45371836 atattgtgatttttgggtattcggaaaatttctcagtctttgggctaagaaggaagatacagttgaaatatgggttatgaaagaatacaaagtgcattcg 45371737  T
Q  201 tcttgg 206  Q
    ||||||    
T  45371736 tcttgg 45371731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 48852901 - 48853099
Alignment:
Q  22 atgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatt 121  Q
    |||||||||| | |||||||||| |||||||||||||||| ||| ||  ||| || |||| |||| || |||||||||   |||| ||||||||| ||||    
T  48852901 atgttattgtggcctttgatttaatggaaaggaaacttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatt 48853000  T
Q  122 tggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    | |||||||||||||| ||||||  |||| |||||  ||||||||||||||||| ||||||||||||||||||| ||||||||||  ||| ||||||||    
T  48853001 tagagaatttctaagtatatgggtcatgggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 48853099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 48147575 - 48147370
Alignment:
Q  7 atgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattg 106  Q
    |||||||| ||| |||||||||| |||  ||||||||| ||||||||| |||||| ||||||| ||||||||||||||||| |  |||| ||  | || |    
T  48147575 atgatttagcaagggatgttattattgcatttgatttaatggaaaggagacttttagagatgccttttccagatggttttggccttgaatctgaatatag 48147476  T
Q  107 tgatttgtggatatttggagaatttctaagtctatgggctatggaggatg------gaacagttgaaatatgggttatgaaagaatacaaagtgcattcg 200  Q
    | |||||||| |||||||| ||||||| ||||||  || ||||||  |||      | | ||||||||||||||| ||||||||||||||||||||||||    
T  48147475 tcatttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcg 48147376  T
Q  201 tcttgg 206  Q
    ||||||    
T  48147375 tcttgg 48147370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 48156262 - 48156069
Alignment:
Q  36 tttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacct-atagattgtgatttgtggatatttggagaatttcta 134  Q
    ||||||||| ||||  |||||||||| ||||||| |||||| ||||||||| || ||  | || ||| ||||| |||||||| ||||||||||||||||     
T  48156262 tttgatttaatggatcggaaacttttagagatgccttttcctgatggttttcaccatacaactgata-attgtaatttgtgggtatttggagaatttctc 48156164  T
Q  135 agtctatgggctatgga---gg---atggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcct 223  Q
    ||| |||||||| | ||   ||   ||| || ||||||||||||||| ||||| ||||||||||||||||| ||||||  |||||||||||||||    
T  48156163 agtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtcct 48156069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 45366070 - 45365877
Alignment:
Q  19 tggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggat 118  Q
    ||||||||||| ||  |||||||||| | ||||||||||||||  | || |||||||||||||  ||| ||  |||||||   ||||||| ||||||| |    
T  45366070 tggatgttattatttcctttgatttaatcgaaaggaaacttttttatattcattttccagatgagtttaaccgtgaacctcacgattgtggtttgtgggt 45365971  T
Q  119 atttggagaatttctaagtctatgggctatggaggatg-----ga-acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 206  Q
    ||||||||||||| | ||| | |||||||||||  |||     || ||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  45365970 atttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatataaagtgcgttcgtcttgg 45365877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 49043940 - 49043811
Alignment:
Q  91 atgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaa 190  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||| ||| ||||| |||   || |||  | ||||||||||||||| ||||||||||||||    
T  49043940 atgaacctacagattgtgatttgtgggtatttggtgaacttcttagtgtatggactagacagaatgatatagttgaaatatgggtgatgaaagaatacaa 49043841  T
Q  191 agtgcattcgtcttgggttaaaactcttgt 220  Q
    |||||||||||| |||  ||| ||||||||    
T  49043840 agtgcattcgtcatggactaagactcttgt 49043811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 49038623 - 49038521
Alignment:
Q  118 tatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactct 217  Q
    ||||| |||||||||| ||| ||||||||||||||  ||  || |||||||||||||| ||||||||||||||||| ||||||||||||  ||| |||||    
T  49038623 tatttcgagaatttctcagtgtatgggctatggagcgtgctaccgttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactct 49038524  T
Q  218 tgt 220  Q
    |||    
T  49038523 tgt 49038521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 7773529 - 7773468
Alignment:
Q  159 acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||    
T  7773529 acagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgt 7773468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 7878740 - 7878801
Alignment:
Q  159 acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||    
T  7878740 acagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgt 7878801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 43596255 - 43596153
Alignment:
Q  39 gatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtc 138  Q
    |||||| | ||||| ||||| || ||||||| |||||| ||||||||||||||||| |||| | |||||||| ||||| ||||||| |||||||| ||||    
T  43596255 gatttaattgaaagcaaactcttagagatgctttttcccgatggttttgactatgatcctaaaaattgtgatatgtgggtatttggggaatttcttagtc 43596156  T
Q  139 tat 141  Q
    |||    
T  43596155 tat 43596153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 7790441 - 7790498
Alignment:
Q  163 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  7790441 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgt 7790498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 7813838 - 7813895
Alignment:
Q  163 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    |||||||||||||  |||||||||||||||||||||||||||||  ||||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgt 7813895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 7908663 - 7908720
Alignment:
Q  163 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgt 7908720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 48864395 - 48864439
Alignment:
Q  162 gttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 206  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttgg 48864439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 48903237 - 48903359
Alignment:
Q  87 gactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggag---gatggaacagttgaaatatgggttatgaaag 183  Q
    ||||||||| ||| | | |||||||| ||| |||||||||||||||| || ||||||||| ||||    |||   | | ||||||||||||| |||||||    
T  48903237 gactatgaatctacaaagtgtgatttatgggtatttggagaatttcttagcctatgggctttggattacgataataaatttgaaatatgggtgatgaaag 48903336  T
Q  184 aatacaaagtgcattcgtcttgg 206  Q
    ||||||||||||||| |||||||    
T  48903337 aatacaaagtgcatttgtcttgg 48903359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 49048323 - 49048216
Alignment:
Q  94 aacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagt 193  Q
    |||||| |||||||||||||||| |||| || || ||||| ||| ||||| ||| | ||||||  | ||||||||||||||| |||||||| || |||||    
T  49048323 aacctacagattgtgatttgtgggtatt-ggtgagtttctcagtgtatggactaagcaggatgatatagttgaaatatgggtgatgaaagagtataaagt 49048225  T
Q  194 gcattcgtc 202  Q
    |||||||||    
T  49048224 gcattcgtc 49048216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 45384595 - 45384549
Alignment:
Q  160 cagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 206  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  45384595 cagttgaaatatgggtgatgaaagaatataaagtgcattcgtcttgg 45384549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 7771760 - 7771813
Alignment:
Q  167 aatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    ||||||||| |||||||||||||||||||||||||| |||  ||||||||||||    
T  7771760 aatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgt 7771813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 7800998 - 7801055
Alignment:
Q  163 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    |||||||||||||  ||||||| |||||||||||||||||||||  ||||||||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgt 7801055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 49044050 - 49043997
Alignment:
Q  8 tgatttatcaatggatgttattgttggctttgatttagtggaaaggaaactttt 61  Q
    ||||||||||||| |||||||||||| |||||||||| | ||||||||||||||    
T  49044050 tgatttatcaatgaatgttattgttgcctttgatttaattgaaaggaaactttt 49043997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 48705245 - 48705170
Alignment:
Q  6 catgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatg 81  Q
    |||||||||  || |||||||||||||| |||||||||| |||||||| ||||||| || |||| ||| |||||||    
T  48705245 catgatttacgaaaggatgttattgttgcctttgatttaatggaaagggaactttttgatatgcttttgccagatg 48705170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 50666561 - 50666733
Alignment:
Q  57 cttttggagatgcattttccagatggt---tttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatgga-- 151  Q
    ||||| ||||||| | |||||||||||   |||| | ||| ||||||| |||||||||||||| ||||| |||| ||||| | | ||| |||||| ||      
T  50666561 cttttagagatgcctcttccagatggtgattttgtccatgtacctataaattgtgatttgtgggtatttagagagtttcttaatttatcggctattgatt 50666660  T
Q  152 ----ggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
        | |||  ||| ||||| ||||||| ||| ||||||||||||||||||| ||||||  ||||||||||||    
T  50666661 atgtgaatgatacaattgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgt 50666733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 7237500 - 7237386
Alignment:
Q  112 tgtggatatttggagaatttctaagtctatgggctatggaggatg-----ga-acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttg 205  Q
    ||||| |||||||||||||||| ||||||||||||  |||  |||     || ||| ||| ||||||||| ||||||||||||||| ||||||||| |||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttg 7237401  T
Q  206 ggttaaaactcttgt 220  Q
    |  ||||||||||||    
T  7237400 gactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 45384747 - 45384634
Alignment:
Q  20 ggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggata 119  Q
    |||||||||| |||   |||||||| | |||| |||||||||  | |||||||| |||||||  ||| ||  ||||||||  ||||||| ||||||| ||    
T  45384747 ggatgttattattgctgttgatttaatcgaaatgaaacttttttatatgcatttgccagatgagtttaaccgtgaacctaccgattgtggtttgtgggta 45384648  T
Q  120 tttggagaatttct 133  Q
    ||||||||||||||    
T  45384647 tttggagaatttct 45384634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 7766003 - 7766042
Alignment:
Q  163 ttgaaatatgggttatgaaagaatacaaagtgcattcgtc 202  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  7766003 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtc 7766042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 7878048 - 7878087
Alignment:
Q  110 tttgtggatatttggagaatttctaagtctatgggctatg 149  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  7878048 tttgtgggtatttggagaatttctcagtctatgggctatg 7878087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 48861649 - 48861692
Alignment:
Q  163 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 206  Q
    ||||||||||||| || ||||||||||||||||||| |||||||    
T  48861649 ttgaaatatgggtaataaaagaatacaaagtgcatttgtcttgg 48861692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 48863625 - 48863683
Alignment:
Q  162 gttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    ||||| |||||||| ||| ||||||||  ||||||||| |||||| |||||||||||||    
T  48863625 gttgacatatgggtgatggaagaatacggagtgcattcatcttggattaaaactcttgt 48863683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 7786825 - 7786882
Alignment:
Q  163 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    ||||||||||||| |||||||||||||| |||||||  ||||||  ||| ||||||||    
T  7786825 ttgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgt 7786882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 37826786 - 37826709
Alignment:
Q  73 ttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatgg 150  Q
    ||||||||| |||| || |||| |||  | ||| || ||||||| |||||||||||||||| ||||||||||| ||||    
T  37826786 ttccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtctatgggccatgg 37826709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 50250572 - 50250454
Alignment:
Q  25 ttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagat---ggttttgactatgaacctatagattgtgatttgtggatatt 121  Q
    ||||||||| |||||||||  || ||||||||||||| ||||| | | ||||||||   | |||||||||| || ||  | ||||| |||||||| ||||    
T  50250572 ttattgttgcctttgatttcatg-aaaggaaactttttgagatccctcttccagatcacgattttgactatcaatctcgatattgttatttgtgggtatt 50250474  T
Q  122 tggagaatttctaagtctat 141  Q
    ||||||| |||| |||||||    
T  50250473 tggagaaattctcagtctat 50250454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 50669378 - 50669431
Alignment:
Q  101 agattgtgatttgtggatatttggagaatttctaagtctatgggctatggagga 154  Q
    |||||||| ||||||| |||||||||||||||| ||||| ||| || |||||||    
T  50669378 agattgtggtttgtgggtatttggagaatttctcagtctttggactttggagga 50669431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 37826681 - 37826633
Alignment:
Q  172 gggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    |||| ||||||||||||||| ||||||||||||||  ||| ||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgt 37826633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 21016020 - 21016225
Alignment:
Q  1 ttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctat 100  Q
    |||| ||||||||||||||| | |||||  ||| |||||||||  | ||||| |||||||| || |||  ||| || |||| | | ||  ||||||||||    
T  21016020 ttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctttgccggatgatatggaacatgaacctat 21016119  T
Q  101 agattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcg 200  Q
    | |||||||||||||| |||| || |||||| | ||| ||||| |||||||   ||  | ||||||||||||||||||||||||||||||||| ||||||    
T  21016120 atattgtgatttgtgggtattcggtgaatttttgagtgtatggactatggatagtgatatagttgaaatatgggttatgaaagaatacaaagtacattcg 21016219  T
Q  201 tcttgg 206  Q
    ||||||    
T  21016220 tcttgg 21016225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 21979477 - 21979420
Alignment:
Q  23 tgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagat 80  Q
    ||||||||||| |||||||||| | |||||||||||||| ||||| | | ||||||||    
T  21979477 tgttattgttgcctttgatttaatagaaaggaaactttttgagatccctcttccagat 21979420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 21979325 - 21979285
Alignment:
Q  166 aaatatgggttatgaaagaatacaaagtgcattcgtcttgg 206  Q
    |||||||||| ||||||||||||||||||| ||| ||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttgg 21979285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 4962385 - 4962180
Alignment:
Q  7 atgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaac----ctatag 102  Q
    ||||||||||| ||||||||||| ||| |||||||||| ||||||||||| | || ||||||| | ||||  ||| ||||||||||||||    || ||     
T  4962385 atgatttatcagtggatgttattattgtctttgatttaatggaaaggaaattgttagagatgcctcttcccaatgattttgactatgaacctgtctgtaa 4962286  T
Q  103 attgtgatttgtggatatttggagaatttctaagtctatgggctatgga------ggatggaacagttgaaatatgggttatgaaagaatacaaagtgca 196  Q
     || || ||||||| |||||||||||||||| ||||||||||  |||||        || | | ||||||||||||||| ||||||||||||||| ||||    
T  4962285 gttatggtttgtgggtatttggagaatttctcagtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaactgca 4962186  T
Q  197 ttcgtc 202  Q
    ||||||    
T  4962185 ttcgtc 4962180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 4031628 - 4031583
Alignment:
Q  161 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  4031628 agttgaaatatgggttatgaaagaatacaaaatgcattcgtcttgg 4031583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 9120040 - 9120181
Alignment:
Q  85 ttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggagg------atggaacagttgaaatatgggttat 178  Q
    |||| |||||| ||| | |||||||| ||||| |||||||||||||||| ||| |||||||||||||        |||  ||||||||||||||||| ||    
T  9120040 ttgattatgaagctacaaattgtgatgtgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgat 9120139  T
Q  179 gaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    ||||||||||||||||||||| ||||||   |||||||||||    
T  9120140 gaaagaatacaaagtgcattcctcttggaagaaaactcttgt 9120181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 179335 - 179463
Alignment:
Q  85 ttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatg-----ga-acagttgaaatatgggttat 178  Q
    ||||||||||| ||| | |||||||| | ||| |||||||| ||||||| ||| |||||||||||||  |||     || ||||||||||||||||| ||    
T  179335 ttgactatgaagctacaaattgtgatgtatgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgat 179434  T
Q  179 gaaagaatacaaagtgcattcgtcttggg 207  Q
    ||||||||||||||||||||| |||||||    
T  179435 gaaagaatacaaagtgcattcatcttggg 179463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 29688481 - 29688533
Alignment:
Q  154 atggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 206  Q
    |||| ||||||||||||||||| |||||| ||||||| ||||| |||||||||    
T  29688481 atggtacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttgg 29688533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 42562034 - 42561990
Alignment:
Q  162 gttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 206  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||||    
T  42562034 gttgatatatgggtgatgaaagaatacaaagtgcattcatcttgg 42561990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 24340634 - 24340829
Alignment:
Q  28 ttgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggaga 127  Q
    |||||| |||||| ||||| |||||||||||| | ||||| | | | ||||||| ||||||| |||    ||  | ||||| ||| ||| ||| | |||     
T  24340634 ttgttgcctttgaattagtcgaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgtagagg 24340733  T
Q  128 atttctaagtctatgggctatggaggatg--ga-acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    ||||||||||||||||| ||||| |||||  || || ||||| || ||||| ||||||||||| |||||||| || ||||||  ||||||||||||    
T  24340734 atttctaagtctatgggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgt 24340829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 24352999 - 24353194
Alignment:
Q  28 ttgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggaga 127  Q
    |||||| |||||| ||||| |||||||||||| | ||||| | | | ||||||| ||||||| |||    ||  | ||||| ||| ||| ||| | |||     
T  24352999 ttgttgcctttgaattagtcgaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgtagagg 24353098  T
Q  128 atttctaagtctatgggctatggaggatg--ga-acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    ||||||||||||||||| ||||| |||||  || || ||||| || ||||| ||||||||||| |||||||| || ||||||  ||||||||||||    
T  24353099 atttctaagtctatgggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgt 24353194  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 24367531 - 24367583
Alignment:
Q  168 atatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    |||||||| ||| ||||||||||||||||||||||||||  ||||||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgt 24367583  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 24310575 - 24310634
Alignment:
Q  161 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    |||||| |||||||| |||||||||||||||||||| || ||||||  ||||||||||||    
T  24310575 agttgatatatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactcttgt 24310634  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 24416137 - 24416196
Alignment:
Q  161 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    |||||| |||||||| |||||||||||||||| ||| || ||||||  ||||||||||||    
T  24416137 agttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgt 24416196  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 48884183 - 48884242
Alignment:
Q  161 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 220  Q
    ||||||||||| ||| |||||||||||||||||||||  |||||||  ||| ||||||||    
T  48884183 agttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgt 48884242  T

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