View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_low_5 (Length: 670)
Name: NF7073_low_5
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 110 - 661
Target Start/End: Original strand, 36952046 - 36952597
Alignment:
| Q |
110 |
attatctgactcttaatttgcaacttggcatcaggtaaattatttgatctctaataatattttcaaaaaacatgtctagtattcatggttgctagtatta |
209 |
Q |
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| T |
36952046 |
attatctgaagcttaatttgcagcttggcatcaggtaaattatttgatctctaataatattttcgaaaaatatgtctagtattcatggttgctagtatta |
36952145 |
T |
|
| Q |
210 |
tcagcattctttcaaatgttctaaacttgaatatttatttatttggtattatgttttatatgaagctttgatttgaannnnnnnngctcaattctcaggt |
309 |
Q |
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| T |
36952146 |
tcagcattctttcaaatgttctaaacttgaatatttatttatttggtattatgttttatatgaagctttgatttgaattttttttgctcaattctcaggt |
36952245 |
T |
|
| Q |
310 |
acactgtaggaaaaattacaccagttcctgcacgtgaagttcggtcgtctgattttggagaaagagctagaataaggatgtactttcctaaggagggttc |
409 |
Q |
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| T |
36952246 |
acactgtaggaaaaattacaccagttcctgcacgtgaagttcggtcgtctgattttggagaaagagctagaataaggatgtactttcctaaggagggttc |
36952345 |
T |
|
| Q |
410 |
acaattgactcctccacactgttctgtagacttctactggaaagattattgccctatggtcttcaggtattcattatcagaataacatgtatataggttc |
509 |
Q |
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| T |
36952346 |
acaattgactcctccacactgttctgtagacttctactggaaagattattgccctatggtcttcaggtattcattatcagaataacatgtatataggttc |
36952445 |
T |
|
| Q |
510 |
ttgatataatatgattttatgattattgtggtgtattagagttcttagtcagagttatgattataagcacatattctttatgtgatttcatatatttcca |
609 |
Q |
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| T |
36952446 |
ttgatataatatgattttatgattattgtggtgtattagagttcttagtcaaagttatgattataagcacatattctttatgtgatttcatatatttcca |
36952545 |
T |
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| Q |
610 |
ggaatttgagagaaatgttcaaattggatgcggccgagtacatgatgtccat |
661 |
Q |
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| T |
36952546 |
ggaatttgagagaaatgttcaaattggatgcggccgagtacatgatgtccat |
36952597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 38453410 - 38453271
Alignment:
| Q |
18 |
aatatatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataataagaaggaaaagcaagattagatggcaattatctg |
117 |
Q |
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| T |
38453410 |
aatatatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataataagaaggaaaagcaagattagatggcgattatctg |
38453311 |
T |
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| Q |
118 |
actcttaatttgcaacttggcatcaggtaaattatttgat |
157 |
Q |
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| T |
38453310 |
actcttaatttgcaacttggcatcaggtaaattatttgat |
38453271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 38633374 - 38633440
Alignment:
| Q |
22 |
tatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataataagaag |
88 |
Q |
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| T |
38633374 |
tatgcaaggagttctaattgtggagaaaattagacagtattcagaagtaacacataataataagaag |
38633440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 39849079 - 39849145
Alignment:
| Q |
18 |
aatatatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataataa |
84 |
Q |
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| T |
39849079 |
aatatatgcaaggagttttaattgtggagaaaatcagaccgtattcagaagtaacacataataataa |
39849145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 39849246 - 39849295
Alignment:
| Q |
110 |
attatctgactcttaatttgcaacttggcatcaggtaaattatttgatct |
159 |
Q |
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||||| ||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
39849246 |
attatatgaatcttaatctgcaacttggcatcaggtaaattatttgatct |
39849295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 38633524 - 38633571
Alignment:
| Q |
112 |
tatctgactcttaatttgcaacttggcatcaggtaaattatttgatct |
159 |
Q |
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| T |
38633524 |
tatctgaatcttaatctgcaacttggcaacaggtaaattacttgatct |
38633571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 7045608 - 7045526
Alignment:
| Q |
18 |
aatatatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataataagaaggaaaagcaagat |
100 |
Q |
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| T |
7045608 |
aatatatgcaaggagttctaattgtggagaaaattaaataggattcagaagtaacatataataataggaacaaaaagcaagat |
7045526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 44475299 - 44475356
Alignment:
| Q |
30 |
gagttctgattgtggagaaaattagaccatattcagaagtaacacataataataagaa |
87 |
Q |
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| T |
44475299 |
gagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaataagaa |
44475356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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