View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_low_6 (Length: 598)
Name: NF7073_low_6
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 2441281 - 2441521
Alignment:
| Q |
14 |
catcagatgtatgacatattactcatacttgatatccaaacagaaaacaacttcaataacttatcataatgcaaagaaataatcacttgtttgaagttat |
113 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
2441281 |
catccgatgtatgacatattactcacacttgatatccaaacagaaaacaacttcaataacgtatcataatgcaatgaaataatcacttgtttgaagttat |
2441380 |
T |
|
| Q |
114 |
agtctctaacatgtctcaagcaaatataatcggacataagagtaacgtccaatactctttgcatataattaagtcaaatacttcctcaaataaacaaatc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441381 |
agtctctaacatgtctcaagcaaatataatcggacat--gattaacgtccaatactctttgcatataattaagtcaaatacttcctcaaataaacaaatc |
2441478 |
T |
|
| Q |
214 |
ttagttaaacaatgttatattataaggacaaaatttatgtaca |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441479 |
ttagttaaacaatgttatattataaggacaaaatttatgtaca |
2441521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 359 - 594
Target Start/End: Original strand, 2441651 - 2441886
Alignment:
| Q |
359 |
agtatttaatgtaaaccattggtaattatgatgattaatggtggtgtccatagaactcaactttaagcaaattgttgatgacatctccaacgaaactggt |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2441651 |
agtatttaatgtaaaccattggtaattatgatgattaatggtggtgtccatagaacttgactttaagcaaattgttgatgacatctccaaggaaactggt |
2441750 |
T |
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| Q |
459 |
atcaattctgagttaggagctattctaaattattgtaagtctctaatttaccaaactttatgataagttcatccgacgacaagcaaacaatgtgactcat |
558 |
Q |
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||||||||||| ||||||||||||||||||||| |||| ||| || |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |
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| T |
2441751 |
atcaattctgaattaggagctattctaaattatcgtaaatctttagtttaccaaactttaagataagttcatccgacgacaaacaaacaatgtggctcat |
2441850 |
T |
|
| Q |
559 |
ttgttagtaagggtgtcattgtctgatgtccatctc |
594 |
Q |
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||||||| |||||||| ||||||| ||||| ||||| |
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| T |
2441851 |
ttgttagcaagggtgttattgtcttatgtcaatctc |
2441886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 322 - 383
Target Start/End: Original strand, 2441590 - 2441651
Alignment:
| Q |
322 |
agaaaattgtgaatttgaaaaaccattgataattatgagtatttaatgtaaaccattggtaa |
383 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441590 |
agaaaattgtaaatttgaaaaaccattgataattatgagtatttaatgtaaaccattggtaa |
2441651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 29869970 - 29869911
Alignment:
| Q |
311 |
aacaaactttaagaaaattgtgaatttgaaaaaccattgataattatgagtatttaatgt |
370 |
Q |
| |
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|||||||||| ||||||||||| |||||| ||| ||||| || |||||||||||| |||| |
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| T |
29869970 |
aacaaactttgagaaaattgtggatttgagaaatcattggtagttatgagtattttatgt |
29869911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 392 - 578
Target Start/End: Complemental strand, 27913823 - 27913629
Alignment:
| Q |
392 |
attaatggtggtgtccatagaactcaactttaagcaaattgttgatgacatctccaacgaaactggtatcaattctgagttaggagctattctaaattat |
491 |
Q |
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|||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||| ||| ||||| || ||| || ||||||| | ||||||||||| |
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| T |
27913823 |
attaatggcggtgtccatagaacttgactgtaagcaagttgttgatgacatctccaacaaaattggtaccagttccgaattaggagttgttctaaattat |
27913724 |
T |
|
| Q |
492 |
tgta-------agtctctaatttaccaaactttatgataag-ttcatccgacgacaagcaaacaatgtgactcatttgttagtaagggtgtcatt |
578 |
Q |
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|||| | |||||| |||||||||||||| ||||| |||||| | |||||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
27913723 |
tgtaaagcttcactctctagtttaccaaactttagtataagtttcatctggcgacaagcaaacaatgtggatcatttgttagcaagggcgtcatt |
27913629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 492
Target Start/End: Complemental strand, 10364921 - 10364867
Alignment:
| Q |
438 |
gacatctccaacgaaactggtatcaattctgagttaggagctattctaaattatt |
492 |
Q |
| |
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|||||||||||| ||| ||||| ||||| || |||||||||||||||||||||| |
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| T |
10364921 |
gacatctccaacaaaattggtaccaatttcgaattaggagctattctaaattatt |
10364867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 16722729 - 16722762
Alignment:
| Q |
309 |
acaacaaactttaagaaaattgtgaatttgaaaa |
342 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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| T |
16722729 |
acaacaaactttaagaaaattatgaatttgaaaa |
16722762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 396 - 581
Target Start/End: Original strand, 36359499 - 36359692
Alignment:
| Q |
396 |
atggtggtgtccatagaactcaactttaagcaaattgttgatgacatctccaacgaaactggtatcaattctgagttaggagctattctaaattattgta |
495 |
Q |
| |
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|||| ||||||||||||||| ||| ||||||| | || || ||||||||||| ||| |||| ||||| ||| ||||||||||||||||| ||||||| |
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| T |
36359499 |
atggcggtgtccatagaacttgactgtaagcaagtcgtagacaacatctccaacaaaatcggtaccaattatgaattaggagctattctaaactattgta |
36359598 |
T |
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| Q |
496 |
agtc-------tctaatttaccaaactttatgataag-ttcatccgacgacaagcaaacaatgtgactcatttgttagtaagggtgtcattgtc |
581 |
Q |
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| T |
36359599 |
aatcttcactttctagattaccaaactttaagataagttttatcagacgacaagcaaacaatgtggctaatttgttagcaagggcttcattgtc |
36359692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 22825693 - 22825750
Alignment:
| Q |
313 |
caaactttaagaaaattgtgaatttgaaaaaccattgataattatgagtatttaatgt |
370 |
Q |
| |
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||||||||||||||||| || |||| ||||| |||||||| |||||||||||| |||| |
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| T |
22825693 |
caaactttaagaaaattatggatttaaaaaatcattgatagttatgagtattttatgt |
22825750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 54671574 - 54671523
Alignment:
| Q |
314 |
aaactttaagaaaattgtgaatttgaaaaaccattgataattatgagtattt |
365 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||| | ||||||||||||||| |
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| T |
54671574 |
aaactttgagaaaattgtgaatttgagaaatcataggtaattatgagtattt |
54671523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 54126587 - 54126646
Alignment:
| Q |
311 |
aacaaactttaagaaaattgtgaatttgaaaaaccattgataattatgagtatttaatgt |
370 |
Q |
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|||||||||||||||||||||| |||||| ||| ||||| || |||| ||||||| |||| |
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| T |
54126587 |
aacaaactttaagaaaattgtggatttgagaaatcattggtagttattagtattttatgt |
54126646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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