View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7073_low_7 (Length: 571)

Name: NF7073_low_7
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7073_low_7
NF7073_low_7
[»] chr3 (4 HSPs)
chr3 (350-482)||(33342795-33342927)
chr3 (478-557)||(33339529-33339608)
chr3 (370-440)||(5834720-5834790)
chr3 (367-459)||(54718327-54718419)
[»] chr1 (1 HSPs)
chr1 (373-440)||(5996023-5996090)
[»] chr8 (3 HSPs)
chr8 (370-419)||(44344729-44344778)
chr8 (378-440)||(3810697-3810759)
chr8 (374-414)||(18838399-18838439)
[»] chr4 (1 HSPs)
chr4 (369-456)||(14272910-14272996)
[»] chr7 (2 HSPs)
chr7 (378-440)||(26502577-26502639)
chr7 (378-440)||(26590075-26590137)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 4e-64; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 350 - 482
Target Start/End: Complemental strand, 33342927 - 33342795
Alignment:
Q  350 ttggttgggtcagtttgcaaggaaattttaccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttacccctcatatat 449  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33342927 ttggttggttcagtttgcaaggaaattttaccccacacccttacatatataccctcatcccaacattttactcaaagtacccattttacccctcatatat 33342828  T
Q  450 aataaaattcttcattcattctcatttgttcca 482  Q
    |||||||||||||||||||||||||||||||||    
T  33342827 aataaaattcttcattcattctcatttgttcca 33342795  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 478 - 557
Target Start/End: Complemental strand, 33339608 - 33339529
Alignment:
Q  478 ttccacacccttgttaggatcctctccatttaaacatgatctccatctatctgtcaaagatgttttctctgttaatgatg 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33339608 ttccacacccttgttaggatcctctccatttaaacatgatctccatctatctgtcaaagatgttttctctgttaatgatg 33339529  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 5834720 - 5834790
Alignment:
Q  370 ggaaattttaccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttaccc 440  Q
    |||| ||||||||||||||||||||| |||||| | | ||||| |||||||||||| | |||| |||||||    
T  5834720 ggaagttttaccccacacccctacatttataccttgaccccaatattttactcaaactgcccaatttaccc 5834790  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 459
Target Start/End: Original strand, 54718327 - 54718419
Alignment:
Q  367 caaggaaattttaccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttacccctcatatataataaaattc 459  Q
    ||||||| || |||||||||||||||||| |||||| | | |||||||||| ||  ||||| || | ||||| | | ||||| ||||||||||    
T  54718327 caaggaagttataccccacacccctacatttataccttgaccccaacatttaacataaagttccaaatttactctttatataaaataaaattc 54718419  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 5996090 - 5996023
Alignment:
Q  373 aattttaccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttaccc 440  Q
    |||||||||||||||||  |||| |||||| ||| || ||||||||||||||||| ||||||||||||    
T  5996090 aattttaccccacaccctcacatttataccttcaccctaacattttactcaaagttcccattttaccc 5996023  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 44344778 - 44344729
Alignment:
Q  370 ggaaattttaccccacacccctacatatataccctcatcccaacatttta 419  Q
    ||||||||||||| | |||||||||| |||||||||| ||||||||||||    
T  44344778 ggaaattttacccgatacccctacatttataccctcaccccaacatttta 44344729  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 3810697 - 3810759
Alignment:
Q  378 taccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttaccc 440  Q
    |||||||||||||||||| |||||| | | |||||||||| || ||||||||| | |||||||    
T  3810697 taccccacacccctacatttataccttgaccccaacatttgacacaaagtaccaaatttaccc 3810759  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 18838399 - 18838439
Alignment:
Q  374 attttaccccacacccctacatatataccctcatcccaaca 414  Q
    ||||||||| |||||||||||| |||||||||| |||||||    
T  18838399 attttacccaacacccctacatttataccctcaccccaaca 18838439  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 456
Target Start/End: Original strand, 14272910 - 14272996
Alignment:
Q  369 aggaaattttaccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttacccctcatatataataaaa 456  Q
    ||||| ||||||||||||||||||||  |||||  | |||||||||||| ||||||| |||| | ||||||| | ||||| |||||||    
T  14272910 aggaagttttaccccacacccctacagttatact-tgatcccaacatttcactcaaactacctaatttaccctttatataaaataaaa 14272996  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 26502577 - 26502639
Alignment:
Q  378 taccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttaccc 440  Q
    |||||||||||||||||| |||||| | | |||||||||| || |||| |||||| |||||||    
T  26502577 taccccacacccctacatttatacctttaccccaacatttgacacaaactacccaatttaccc 26502639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 26590137 - 26590075
Alignment:
Q  378 taccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttaccc 440  Q
    |||||||||||||||||| |||||| | | |||||||||| || |||| |||||| |||||||    
T  26590137 taccccacacccctacatttatacctttaccccaacatttgacacaaactacccaatttaccc 26590075  T

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