View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7073_low_8 (Length: 497)
Name: NF7073_low_8
Description: NF7073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7073_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Original strand, 49934794 - 49935253
Alignment:
| Q |
17 |
acatcacattgtggttttgttaagcttcctctaagatctccttccatgtgcaagatacccttaataggtgccaacgacggctccaaagaatgaacaacac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49934794 |
acatcacattgtggttttgttaagcttcctctaagatctccttccatgtgcaagatacccttaataggtgccaacgacggctccaaagaatgaacaacac |
49934893 |
T |
|
| Q |
117 |
ctgttgctgtagattcaacaagctgagcaacagttgggaccagactaaccggaaagtttaagacggcaaaatgaaggttggttttaggtcctaacaaagt |
216 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49934894 |
ccgttgctgtagattcaacaagctgagcaacagttgggaccagactaaccggaaagtttaagacggcaaaatgaaggttggttttaggtcctaacaaagt |
49934993 |
T |
|
| Q |
217 |
tccatcagcatgaacagttgcattatcattctggatnnnnnnnttctccaggtgcataccattatcattagtgtaagcaccaactgccaggatacgttga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49934994 |
tccatcagcatgaacagttgcattatcattctggataaaaaaattctccaggtgcataccattatcattagtgtaagcaccaactgccaggatacgttga |
49935093 |
T |
|
| Q |
317 |
gttttgttgtcttcccactcccaatcctccccatgaaggtcaaattttgcctaaaatgacatcaaaaaataaattcaatcttcttcattaagttgacaat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49935094 |
gttttgttgtcttcccactcccaatcctccccatgaaggtcaaattttgcctaaaatgacatcaaaaaataaagtcaatcttcttcattaagttgacaat |
49935193 |
T |
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| Q |
417 |
ttatgctaactccaagtaatagtaatacaaaacagtaagtttttaccagggtgtctccat |
476 |
Q |
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| T |
49935194 |
ttatgctaactccaagtaaaagtaatacaaaacagtaagtttttaccagggtgtctccat |
49935253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 1913619 - 1913259
Alignment:
| Q |
17 |
acatcacattgtggttttgttaagcttcctctaagatctccttccatgtgcaagatacccttaataggtgccaacgacggctccaaagaatgaacaacac |
116 |
Q |
| |
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|||||||||| |||||||| ||| |||||||| ||||| |||||||| ||||| || ||| |||| |||||||| || || |||||||||||| |
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| T |
1913619 |
acatcacattctggttttgctaaacttcctctgagatcaccttccatatgcaatatgcccctaatgggtgccaaaagttgccgcagcgaatgaacaacat |
1913520 |
T |
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| Q |
117 |
ctgttgctgtagattcaacaagctgagcaacagttgggaccagactaaccggaaagtttaagacggcaaaatgaaggttggttttaggtcctaacaaagt |
216 |
Q |
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|||||||||||||||| | | |||| | ||||| ||||||| |||||| ||||| |||||||| |||||||| |||||||||||||| |||||||| || |
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| T |
1913519 |
ctgttgctgtagattcgaagacctgaactacagtggggaccaaactaacaggaaaatttaagacagcaaaatggaggttggttttaggccctaacaatgt |
1913420 |
T |
|
| Q |
217 |
tccatcagcatgaacagttgcattatcattctggatnnnnnnnttctccaggtgcataccattatcattagtgtaagcaccaactgccaggatacgttga |
316 |
Q |
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|||||| ||||| | ||||||||||| |||||||| ||||||||||||||||||| ||||| | |||||||||||||||||| || ||| ||| |
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| T |
1913419 |
tccatctgcatggatggttgcattatccttctggatgaaaattttctccaggtgcataccatcatcatgactgtaagcaccaactgccacgacacgctga |
1913320 |
T |
|
| Q |
317 |
gttttgttgtcttcccactcccaatcctccccatgaaggtcaaattttgcctaaaatgaca |
377 |
Q |
| |
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||||||| |||| |||||||||| ||||||||||||| |||||| | ||||| |||||||| |
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| T |
1913319 |
gttttgtagtctccccactcccagtcctccccatgaaagtcaaactctgcctgaaatgaca |
1913259 |
T |
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