View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7074_high_1 (Length: 1882)

Name: NF7074_high_1
Description: NF7074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7074_high_1
NF7074_high_1
[»] chr7 (27 HSPs)
chr7 (741-1079)||(20337016-20337354)
chr7 (198-461)||(20336482-20336736)
chr7 (1728-1864)||(20337955-20338091)
chr7 (535-654)||(20336810-20336929)
chr7 (1349-1526)||(20337541-20337720)
chr7 (1141-1266)||(20337416-20337544)
chr7 (15-84)||(20336298-20336367)
chr7 (1806-1864)||(20141724-20141782)
chr7 (1155-1219)||(1471178-1471242)
chr7 (1155-1220)||(12645797-12645861)
chr7 (1157-1222)||(22817060-22817125)
chr7 (1814-1862)||(20134224-20134272)
chr7 (1160-1222)||(32351542-32351604)
chr7 (1155-1220)||(7817756-7817820)
chr7 (1155-1220)||(35627907-35627972)
chr7 (1157-1222)||(38656657-38656722)
chr7 (1173-1221)||(25200200-25200248)
chr7 (1033-1073)||(32919013-32919053)
chr7 (1155-1219)||(35600791-35600855)
chr7 (1155-1215)||(40417893-40417953)
chr7 (1172-1219)||(6253320-6253367)
chr7 (1155-1222)||(11352859-11352925)
chr7 (1155-1222)||(23034391-23034457)
chr7 (1155-1226)||(47356103-47356174)
chr7 (1155-1221)||(46022153-46022219)
chr7 (1163-1224)||(1284541-1284602)
chr7 (1155-1224)||(39497184-39497253)
[»] chr4 (39 HSPs)
chr4 (819-984)||(20861106-20861268)
chr4 (1155-1222)||(27371260-27371327)
chr4 (1155-1220)||(19174661-19174726)
chr4 (1155-1222)||(1627440-1627510)
chr4 (1155-1211)||(24990234-24990290)
chr4 (1185-1224)||(6520716-6520755)
chr4 (1155-1221)||(34616680-34616746)
chr4 (1155-1221)||(39654943-39655009)
chr4 (1157-1219)||(42815526-42815588)
chr4 (1155-1220)||(336694-336759)
chr4 (1155-1224)||(515528-515597)
chr4 (1157-1222)||(32696673-32696738)
chr4 (1155-1220)||(50831642-50831707)
chr4 (1157-1221)||(53796777-53796841)
chr4 (1185-1220)||(12375864-12375899)
chr4 (1155-1222)||(17683461-17683527)
chr4 (1155-1222)||(18767979-18768046)
chr4 (1158-1224)||(33423461-33423527)
chr4 (1155-1222)||(35936085-35936152)
chr4 (1176-1215)||(52431018-52431057)
chr4 (1035-1073)||(13252537-13252575)
chr4 (1155-1221)||(24509273-24509339)
chr4 (1158-1216)||(26148093-26148151)
chr4 (1155-1221)||(38382440-38382506)
chr4 (1155-1213)||(45143567-45143624)
chr4 (1155-1213)||(45152336-45152393)
chr4 (1155-1221)||(47181960-47182026)
chr4 (1155-1221)||(48402083-48402149)
chr4 (1158-1215)||(1797713-1797770)
chr4 (1157-1222)||(3078792-3078857)
chr4 (1157-1222)||(12595515-12595580)
chr4 (1155-1216)||(14603576-14603637)
chr4 (1184-1217)||(17367215-17367248)
chr4 (1155-1220)||(22819769-22819833)
chr4 (1155-1212)||(23662211-23662268)
chr4 (1155-1220)||(33093003-33093068)
chr4 (1155-1224)||(42491193-42491262)
chr4 (1155-1215)||(46038782-46038840)
chr4 (1150-1230)||(47744389-47744470)
[»] chr1 (21 HSPs)
chr1 (1157-1218)||(31433611-31433672)
chr1 (1155-1218)||(29706592-29706655)
chr1 (1155-1220)||(11597756-11597821)
chr1 (1155-1220)||(27357613-27357678)
chr1 (1155-1224)||(44517844-44517913)
chr1 (1158-1221)||(1820992-1821055)
chr1 (1158-1221)||(37610671-37610734)
chr1 (1155-1221)||(6949866-6949932)
chr1 (1155-1219)||(10889934-10889997)
chr1 (1155-1219)||(13489782-13489845)
chr1 (1155-1215)||(31975110-31975169)
chr1 (1181-1216)||(4862311-4862346)
chr1 (1155-1222)||(29154898-29154964)
chr1 (1155-1218)||(32158685-32158748)
chr1 (1155-1214)||(33358051-33358109)
chr1 (1176-1218)||(41451768-41451810)
chr1 (1157-1219)||(46281558-46281620)
chr1 (1155-1215)||(12127983-12128044)
chr1 (1178-1219)||(32266228-32266269)
chr1 (1155-1220)||(50328028-50328092)
chr1 (1155-1220)||(50824861-50824925)
[»] chr8 (13 HSPs)
chr8 (1157-1221)||(24795370-24795434)
chr8 (1158-1222)||(6445302-6445366)
chr8 (1155-1222)||(37754681-37754748)
chr8 (1155-1222)||(40517377-40517444)
chr8 (1155-1213)||(6182347-6182405)
chr8 (1157-1219)||(10644689-10644751)
chr8 (1172-1217)||(2621917-2621962)
chr8 (1155-1220)||(36969561-36969626)
chr8 (1155-1214)||(14707236-14707294)
chr8 (1158-1221)||(25018490-25018553)
chr8 (1155-1213)||(144150-144208)
chr8 (1155-1221)||(36885374-36885439)
chr8 (1155-1216)||(39465614-39465675)
[»] chr2 (30 HSPs)
chr2 (1155-1215)||(20532354-20532414)
chr2 (1155-1222)||(44050134-44050201)
chr2 (1155-1219)||(3412442-3412506)
chr2 (1155-1215)||(44977391-44977451)
chr2 (1162-1222)||(5054057-5054117)
chr2 (1155-1219)||(9521927-9521991)
chr2 (1155-1219)||(14255422-14255486)
chr2 (1155-1222)||(23352792-23352858)
chr2 (1155-1222)||(31296657-31296724)
chr2 (1155-1214)||(44254721-44254779)
chr2 (1157-1219)||(34134658-34134720)
chr2 (1155-1223)||(1863775-1863841)
chr2 (1155-1219)||(32344616-32344680)
chr2 (1158-1222)||(36436690-36436753)
chr2 (1155-1227)||(37105758-37105828)
chr2 (1167-1222)||(3012737-3012792)
chr2 (1158-1225)||(13765523-13765589)
chr2 (1155-1214)||(42430769-42430828)
chr2 (1155-1221)||(3097747-3097813)
chr2 (1155-1221)||(13333056-13333122)
chr2 (1158-1216)||(16199603-16199661)
chr2 (1155-1220)||(1907650-1907715)
chr2 (1033-1074)||(3723881-3723922)
chr2 (1155-1220)||(5032043-5032108)
chr2 (1155-1216)||(14890979-14891040)
chr2 (1179-1224)||(30220688-30220733)
chr2 (1158-1215)||(30339756-30339813)
chr2 (1155-1216)||(36625207-36625268)
chr2 (1158-1215)||(39147888-39147945)
chr2 (1155-1220)||(43520977-43521042)
[»] chr6 (15 HSPs)
chr6 (1158-1210)||(34084526-34084578)
chr6 (1155-1229)||(25127708-25127782)
chr6 (1155-1215)||(3552047-3552107)
chr6 (1155-1215)||(30945933-30945993)
chr6 (1155-1219)||(30956191-30956255)
chr6 (1155-1220)||(33019039-33019104)
chr6 (1155-1219)||(3832583-3832646)
chr6 (1155-1223)||(26595468-26595536)
chr6 (1155-1221)||(4820486-4820552)
chr6 (1155-1221)||(16199569-16199635)
chr6 (1155-1213)||(30621859-30621917)
chr6 (1155-1221)||(31883189-31883255)
chr6 (1158-1220)||(33656893-33656955)
chr6 (1155-1224)||(10826622-10826691)
chr6 (1155-1220)||(18141188-18141252)
[»] chr5 (15 HSPs)
chr5 (1155-1221)||(24405841-24405907)
chr5 (1155-1219)||(27546185-27546249)
chr5 (1157-1221)||(18695440-18695504)
chr5 (1157-1219)||(6940037-6940099)
chr5 (1155-1221)||(41175592-41175657)
chr5 (1156-1212)||(1293013-1293069)
chr5 (1157-1221)||(9939317-9939381)
chr5 (1155-1222)||(10649555-10649621)
chr5 (1155-1214)||(15952938-15952996)
chr5 (1155-1222)||(33655298-33655365)
chr5 (1155-1221)||(17626105-17626171)
chr5 (1155-1220)||(19839873-19839937)
chr5 (1032-1073)||(34216550-34216591)
chr5 (1155-1220)||(34546535-34546600)
chr5 (1155-1220)||(43441858-43441922)
[»] chr3 (29 HSPs)
chr3 (1155-1220)||(52564536-52564601)
chr3 (1155-1215)||(34627773-34627833)
chr3 (1155-1223)||(46965984-46966052)
chr3 (1162-1213)||(11075270-11075321)
chr3 (1155-1229)||(819091-819165)
chr3 (1162-1215)||(11056825-11056878)
chr3 (1155-1216)||(27511844-27511904)
chr3 (1155-1220)||(54007581-54007646)
chr3 (1155-1223)||(46965893-46965961)
chr3 (1157-1219)||(29030694-29030756)
chr3 (1155-1220)||(55361120-55361185)
chr3 (1155-1215)||(12762581-12762641)
chr3 (1155-1211)||(26645146-26645201)
chr3 (1155-1214)||(6093771-6093830)
chr3 (1163-1222)||(6178310-6178369)
chr3 (1162-1221)||(33256435-33256494)
chr3 (1155-1214)||(39697115-39697173)
chr3 (1162-1221)||(45205403-45205462)
chr3 (1155-1222)||(51465799-51465865)
chr3 (1167-1221)||(6999301-6999355)
chr3 (1155-1220)||(9158759-9158824)
chr3 (1161-1215)||(9719340-9719394)
chr3 (1155-1221)||(21217631-21217697)
chr3 (1155-1221)||(37056943-37057009)
chr3 (1034-1072)||(50146487-50146525)
chr3 (1155-1224)||(13348017-13348086)
chr3 (1157-1222)||(29573240-29573305)
chr3 (1155-1219)||(36412243-36412307)
chr3 (1155-1215)||(45754758-45754819)
[»] scaffold0141 (1 HSPs)
scaffold0141 (1155-1221)||(12052-12117)
[»] scaffold0095 (1 HSPs)
scaffold0095 (1155-1216)||(22826-22887)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1155-1216)||(213741-213802)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1162-1223)||(469520-469581)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-174; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-174
Query Start/End: Original strand, 741 - 1079
Target Start/End: Original strand, 20337016 - 20337354
Alignment:
Q  741 gagatcctaattcatcaatccttaacaacggttgcagaccctcaggaggggaggaatgaatagacaaaacttcatctatcgaagctccaagcttggccat 840  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  20337016 gagatcctaattcatcaatccttaacaacggttgcagaccctcaggaggggaggaatgaatagacaaaacgtcatctatcgaagctccaagtttggccat 20337115  T
Q  841 gaagttcgcacagtattgattgtcttctctgaacgaatgctggagagagtagtttctagagttgagaaggtccttaatgttctgtataagaaaaacatac 940  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20337116 gaagttcgcacagtactgattgtcttctctgagcgaatgctggagagagtagtttctagagttgagaaggtccttaatgttctggataagaaaaacatac 20337215  T
Q  941 acatgatactgaggaagatcatccttcatgaggttgaccgtgagaaggcaatcatttggacatttaatctagacacatacaaccatttgcgaaagagaaa 1040  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20337216 acatgatactgaggaagatcatccttgatgaggttgaccgcgagaaggcaatcatttggacatttaatctagacacatacaaccatttgcgaaagagaaa 20337315  T
Q  1041 tgttatttatataatcattttgtgacaatttttatgata 1079  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20337316 tgttatttatataatcattttgtgacaatttttatgata 20337354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 198 - 461
Target Start/End: Original strand, 20336482 - 20336736
Alignment:
Q  198 gtgatagttaggcaaaccaaagccgtccctaaagaaatccacacaaatgcctgtagcctgtaggcactcaacaaaccaaaccgatccatgaatgcctata 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||    
T  20336482 gtgatagttaggcaaaccaaagccgtccctaaagaaatccacacaaattcctg-------taggcactcaacaaaccaaaccgatccatgaatgcctata 20336574  T
Q  298 ggcacttaacaacaactgccttcacgaaatatgtggacaattacttttgagatcaacgatgaattttataaagattatcatcaaagaggtaacctagaag 397  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20336575 ggcacttaacaacaactgccttcacgaaatttgtggacaattacttttgagatcaacgatgaattttataaagattatcatcaaagaggtaacctagaag 20336674  T
Q  398 gttacttcaatgagataatttaaggtaatgtttttcataactagcactataatgtgcattagtt 461  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||||||||| |||||||||||    
T  20336675 gttacttcaatgagataatttaaggtactgtttttcataa--agcactataacgtgcattagtt 20336736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 3e-61
Query Start/End: Original strand, 1728 - 1864
Target Start/End: Original strand, 20337955 - 20338091
Alignment:
Q  1728 aaatataatagagctaagaagtgtgtttgtttttattgtgccgttacctttcaacctttctactctccaattctccaaacatttgcaacaaaaatcccat 1827  Q
    ||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20337955 aaatataatggagctaagaagtgtctttgtttttattgtgtcattacctttcaacctttctactctccaattctccaaacatttgcaacaaaaatcccat 20338054  T
Q  1828 catgagtctcctatcaccatcacagcgtcctaccatc 1864  Q
    |||||||||||||||||||||||||||||||||||||    
T  20338055 catgagtctcctatcaccatcacagcgtcctaccatc 20338091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 3e-58
Query Start/End: Original strand, 535 - 654
Target Start/End: Original strand, 20336810 - 20336929
Alignment:
Q  535 gaatagttattttctcaagtgtcttacaaacactctttaacattttatatttgttttgttgaacaaagaaagtatatgaaagaaggaaaatacttgtctg 634  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20336810 gaatacttattttctcaagtgtcttacaaacactctttaacattttatatttgttttgttgaacaaagaaagtatatgaaagaaggaaaatacttgtctg 20336909  T
Q  635 gtttcggtcatttggacatt 654  Q
    ||||||||||||||||||||    
T  20336910 gtttcggtcatttggacatt 20336929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 116; E-Value: 3e-58
Query Start/End: Original strand, 1349 - 1526
Target Start/End: Original strand, 20337541 - 20337720
Alignment:
Q  1349 tttttgttgttgaaaggagcaagaaatttccttgtttcatctacattttattgtttggnnnnnnntatatattggttaaataagtttttcgtgctgataa 1448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||    
T  20337541 tttttgttgttgaaaggagcaagaaatttccttgtttcatctacattttattgtttgg-aaaaaatatatatgggttaaataagtttttcgtgctgataa 20337639  T
Q  1449 aaattatcaaatttccttttc---ctttatnnnnnnntgacatatttctataaaattgtttagcatgtcattttggtcctc 1526  Q
    |||||||||||||||||||||   ||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  20337640 aaattatcaaatttccttttccttctttataaaaaaatgacatatttctataaaattgtttagcatgtcattttggtcctc 20337720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 2e-50
Query Start/End: Original strand, 1141 - 1266
Target Start/End: Original strand, 20337416 - 20337544
Alignment:
Q  1141 gtcaacacgcattgttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt---aagaaaaagtagaaa 1237  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||||||| |    
T  20337416 gtcaacactcattgttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaaaaaaaaaaagtagaga 20337515  T
Q  1238 aagaaaagaattaaataatattcactttt 1266  Q
    |||||||||||||||||||||||||||||    
T  20337516 aagaaaagaattaaataatattcactttt 20337544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 20336298 - 20336367
Alignment:
Q  15 ggacatcaagagaaaacatcgacatttcaattggattgacaccccattgagattgcttatcctacgccgc 84  Q
    |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||||||||||||||||    
T  20336298 ggacatcaagagaaaacatcgacattccaattaaattgacaccccgttgagattgcttatcctacgccgc 20336367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1806 - 1864
Target Start/End: Complemental strand, 20141782 - 20141724
Alignment:
Q  1806 acatttgcaacaaaaatcccatcatgagtctcctatcaccatcacagcgtcctaccatc 1864  Q
    ||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||    
T  20141782 acatttgtaacaaaaatcccatcatgaatcacctatcaccatcacggcgtcctaccatc 20141724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Complemental strand, 1471242 - 1471178
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||||||||||| ||  ||||||||||   |||||||||||||||||||||||||||    
T  1471242 ttctttgtaaatttatggttgtcaaataagttgtctatcaaatagttgttcaaataacacacctc 1471178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 12645861 - 12645797
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||| |||||||||||| |||||||||  |||||||||||||||||| ||| |||||    
T  12645861 ttctttgtaaatt-atggttatctcaaaagttgtcaaccaaatagttgttcaaatatcactcctct 12645797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1157 - 1222
Target Start/End: Original strand, 22817060 - 22817125
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||  |||||||| || |||||||||| ||| | ||||||||||||||||||||||||    
T  22817060 ctttgtaaattagtggttatcacaaaagttgtcattcaattggttgttcaaataacacacctcttt 22817125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1814 - 1862
Target Start/End: Complemental strand, 20134272 - 20134224
Alignment:
Q  1814 aacaaaaatcccatcatgagtctcctatcaccatcacagcgtcctacca 1862  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  20134272 aacaaaaatcccatcatgaatctcctatctccatcacaacgtcctacca 20134224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1160 - 1222
Target Start/End: Complemental strand, 32351604 - 32351542
Alignment:
Q  1160 tgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||  ||||||||||||||||||||| || |||||| ||| ||| ||||||    
T  32351604 tgtaaatttatggttgactcataagttgtcatacaaatggtagttcaattaatacaactcttt 32351542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Original strand, 7817756 - 7817820
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| |||||||||||||||| |||||    
T  7817756 ttctttgtaaatt-atggttgtcacataagttgtcaaccaaatggttgttcaaataacactcctct 7817820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 35627972 - 35627907
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    |||||| |||| |||||||||||||| ||||| |||  || |||||||||||||||||||| ||||    
T  35627972 ttctttataaaattatggttatctcaaaagttatcaatcagatagttgttcaaataacacaactct 35627907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1157 - 1222
Target Start/End: Original strand, 38656657 - 38656722
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    ||||||||||| |||||| || || ||||| |||| ||| | ||||||||||||||||||||||||    
T  38656657 ctttgtaaattaatggttctcacaaaagttatcattcaattggttgttcaaataacacacctcttt 38656722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1173 - 1221
Target Start/End: Complemental strand, 25200248 - 25200200
Alignment:
Q  1173 ttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    ||||| |||||||||| |  |||||||||||||||||||||||||||||    
T  25200248 ttatcacataagttgttaagcaaatagttgttcaaataacacacctctt 25200200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1033 - 1073
Target Start/End: Complemental strand, 32919053 - 32919013
Alignment:
Q  1033 aagagaaatgttatttatataatcattttgtgacaattttt 1073  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  32919053 aagagaaatgatatttatacaatcattttgtgacaattttt 32919013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Original strand, 35600791 - 35600855
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||||  ||||| || || |||||||||  ||||| |||||||||||||||||||||    
T  35600791 ttctttgtaaattagtggttgtcacaaaagttgtcactcaaatggttgttcaaataacacacctc 35600855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1155 - 1215
Target Start/End: Original strand, 40417893 - 40417953
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    ||||||||||| || ||||| ||||| |||||||| || |||||| |||||||||||||||    
T  40417893 ttctttgtaaaattttggttgtctcaaaagttgtcgtataaatagatgttcaaataacaca 40417953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1172 - 1219
Target Start/End: Original strand, 6253320 - 6253367
Alignment:
Q  1172 gttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||||||||||| ||||| ||||| ||||||| |||||||    
T  6253320 gttatctcataagttgtcatgcaaatggttgtccaaataatacacctc 6253367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Complemental strand, 11352925 - 11352859
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||||    
T  11352925 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 11352859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Original strand, 23034391 - 23034457
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||||||| || |  ||||||||| |||||| |||||||||||| | |||||||||    
T  23034391 ttctttgtaaatttatggttgtc-ctgaagttgtcacacaaatggttgttcaaatagcccacctcttt 23034457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1226
Target Start/End: Original strand, 47356103 - 47356174
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaaga 1226  Q
    |||||| |||||  |||||| || | ||||||||||||||||| |||||| |||||||||| ||||| ||||    
T  47356103 ttctttataaatcaatggttgtcccgtaagttgtcatacaaatggttgttaaaataacacaactcttaaaga 47356174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Complemental strand, 46022219 - 46022153
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  46022219 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 46022153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1163 - 1224
Target Start/End: Original strand, 1284541 - 1284602
Alignment:
Q  1163 aaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 1224  Q
    ||||||||| || | ||| ||||| ||||| |||| ||||||||||||||||| ||||||||    
T  1284541 aaatttatgattgtatcaaaagttatcataaaaatggttgttcaaataacacaactctttaa 1284602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1224
Target Start/End: Complemental strand, 39497253 - 39497184
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 1224  Q
    ||||||||| ||| |||||| ||| ||||||| ||||  |||| ||||||||||||||||| ||| ||||    
T  39497253 ttctttgtacattaatggttgtcttataagttatcattgaaatggttgttcaaataacacaactcattaa 39497184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 2e-34; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 819 - 984
Target Start/End: Complemental strand, 20861268 - 20861106
Alignment:
Q  819 tcgaagctccaagcttggccatgaagttcgcacagtattgattgtcttctctgaacgaatgctggagagagtagtttctagagttgagaaggtccttaat 918  Q
    ||||||||||||||||||||||||||| |||||| |   ||||  ||||||| | ||||||||  |||||| ||||||||||||| || | ||| |||||    
T  20861268 tcgaagctccaagcttggccatgaagtccgcacact---gattaccttctcttagcgaatgctaaagagagaagtttctagagttcaggaagtctttaat 20861172  T
Q  919 gttctgtataagaaaaacatacacatgatactgaggaagatcatccttcatgaggttgaccgtgag 984  Q
    |||||| ||||||| |||||| ||||| |||| ||||||||||||||| |||||||||||||||||    
T  20861171 gttctgaataagaacaacataaacatggtactaaggaagatcatccttgatgaggttgaccgtgag 20861106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Original strand, 27371260 - 27371327
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||||||| ||||||||||| ||| | |||| ||||||||||||||||||||||||    
T  27371260 ttctttgtaaatttatggttgtctcataagttctcaaataaattgttgttcaaataacacacctcttt 27371327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 19174726 - 19174661
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||||||| || ||||| ||||||||| |||| | ||||||||||||||||| ||||    
T  19174726 ttctttgtaaatttatgtttgtctcaaaagttgtcacacaattggttgttcaaataacacatctct 19174661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Complemental strand, 1627510 - 1627440
Alignment:
Q  1155 ttctttgtaaatttatggttatctcat---aagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||||||| || ||    |||||||||| ||||||||||||||||||||||| ||||||    
T  1627510 ttctttgtaaatttatggttgtcacaacaaaagttgtcatccaaatagttgttcaaataacacaactcttt 1627440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1155 - 1211
Target Start/End: Original strand, 24990234 - 24990290
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataa 1211  Q
    |||||||||||||||||||| || |||||||||||||||||||  || |||||||||    
T  24990234 ttctttgtaaatttatggttgtcccataagttgtcatacaaatgattattcaaataa 24990290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1185 - 1224
Target Start/End: Complemental strand, 6520755 - 6520716
Alignment:
Q  1185 ttgtcatacaaatagttgttcaaataacacacctctttaa 1224  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  6520755 ttgtcatacaaatggttgttcaaataacacacctctttaa 6520716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Original strand, 34616680 - 34616746
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||||| ||||||||||||||| |||||    
T  34616680 ttctttataaaattttggttgtctcaaaagttgtcatataaatagatgttcaaataacacaactctt 34616746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Original strand, 39654943 - 39655009
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||||||||||||||||| ||| | || || ||||  |||||||||||||||||||||| |||||    
T  39654943 ttctttgtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacacaactctt 39655009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1157 - 1219
Target Start/End: Original strand, 42815526 - 42815588
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||||||||| ||  ||||||||||   ||||| |||||||||||||||||||||    
T  42815526 ctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctc 42815588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 336759 - 336694
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||| ||||| |||||| | ||| ||||||||||| ||| |||||||||||||||||| ||||    
T  336759 ttctttgcaaattaatggttgtatcaaaagttgtcataaaaaaagttgttcaaataacacaactct 336694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1155 - 1224
Target Start/End: Complemental strand, 515597 - 515528
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 1224  Q
    |||||| |||||||||| |||| ||| ||||||||||| |||||  | ||||||||||||| ||||||||    
T  515597 ttctttataaatttatgattatttcaaaagttgtcatataaataaatattcaaataacacaactctttaa 515528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1157 - 1222
Target Start/End: Complemental strand, 32696738 - 32696673
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||||| |   |||| ||||||  ||||| ||||||||||||||||||||||||    
T  32696738 ctttgtaaatttatggttgtacaataaattgtcaaccaaatggttgttcaaataacacacctcttt 32696673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 50831707 - 50831642
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||| |||||||| || || |||||||||  ||||| ||||||||||||||||| ||||    
T  50831707 ttctttgtaaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactct 50831642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1157 - 1221
Target Start/End: Original strand, 53796777 - 53796841
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||||||||  ||||| || || |||||||||| ||| ||||||||||||||||||| |||||    
T  53796777 ctttgtaaattagtggttgtcacaaaagttgtcattcaattagttgttcaaataacacagctctt 53796841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1185 - 1220
Target Start/End: Complemental strand, 12375899 - 12375864
Alignment:
Q  1185 ttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||| ||||||||||||||||||||||    
T  12375899 ttgtcatacaaatggttgttcaaataacacacctct 12375864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Original strand, 17683461 - 17683527
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||||    
T  17683461 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 17683527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Original strand, 18767979 - 18768046
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||| ||||||||||||| ||| | ||||| ||| ||||||| ||||| ||||||||||| |||||    
T  18767979 ttctttataaatttatggttgtcttaaaagttatcacacaaataattgtttaaataacacacatcttt 18768046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1158 - 1224
Target Start/End: Original strand, 33423461 - 33423527
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgt-catacaaatagttgttcaaataacacacctctttaa 1224  Q
    ||||||||||||||||||||  ||||||||| |||| |||| ||||| ||||||||||| ||||||||    
T  33423461 tttgtaaatttatggttatcaaataagttgtccata-aaatggttgtgcaaataacacatctctttaa 33423527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Original strand, 35936085 - 35936152
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||| ||| ||||||| ||  | ||||||||| ||||||  |||||||||||||||||||||||    
T  35936085 ttctttgtgaatgtatggttgtcctaaaagttgtcacacaaatgattgttcaaataacacacctcttt 35936152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1176 - 1215
Target Start/End: Original strand, 52431018 - 52431057
Alignment:
Q  1176 tctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  52431018 tctcataggttgtcatacaaatggttgttcaaataacaca 52431057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1035 - 1073
Target Start/End: Original strand, 13252537 - 13252575
Alignment:
Q  1035 gagaaatgttatttatataatcattttgtgacaattttt 1073  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  13252537 gagaaatgatatttatataatcattttgtgataattttt 13252575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Complemental strand, 24509339 - 24509273
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||||||||||  ||||| || || || || |||  |||||||||||||||||||||||||||||    
T  24509339 ttctttgtaaattagtggttgtcacaaaaattatcactcaaatagttgttcaaataacacacctctt 24509273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1158 - 1216
Target Start/End: Complemental strand, 26148151 - 26148093
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 1216  Q
    ||||||||| ||||||| | | ||||||||| |||||||| ||||||||||||| ||||    
T  26148151 tttgtaaatctatggttgttttataagttgttatacaaatggttgttcaaataaaacac 26148093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Original strand, 38382440 - 38382506
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  38382440 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 38382506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1213
Target Start/End: Complemental strand, 45143624 - 45143567
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 1213  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||    
T  45143624 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatagttgttcaaataaca 45143567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1213
Target Start/End: Complemental strand, 45152393 - 45152336
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 1213  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||    
T  45152393 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatagttgttcaaataaca 45152336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Original strand, 47181960 - 47182026
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  47181960 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 47182026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Complemental strand, 48402149 - 48402083
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  48402149 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 48402083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1158 - 1215
Target Start/End: Complemental strand, 1797770 - 1797713
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    ||||||||| |||| || |||| ||||||||||| ||||| || ||||||||||||||    
T  1797770 tttgtaaatctatgattgtctcgtaagttgtcattcaaatggtagttcaaataacaca 1797713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1157 - 1222
Target Start/End: Complemental strand, 3078857 - 3078792
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||||| ||  ||||||||||   |||||  |||||||||||| ||||||||||    
T  3078857 ctttgtaaatttatggttgtcaaataagttgtctatcaaatgattgttcaaataagacacctcttt 3078792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1157 - 1222
Target Start/End: Complemental strand, 12595580 - 12595515
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||| ||||||||||||| || || || |||||||  |||| ||||||||||||||||| ||||||    
T  12595580 ctttataaatttatggttgtcccaaaaattgtcatcaaaatggttgttcaaataacacatctcttt 12595515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1216
Target Start/End: Original strand, 14603576 - 14603637
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 1216  Q
    |||||| ||||||||||||| ||||| || |||||||  ||||  |||||||||||||||||    
T  14603576 ttctttataaatttatggttgtctcaaaaattgtcatggaaatgattgttcaaataacacac 14603637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1184 - 1217
Target Start/End: Original strand, 17367215 - 17367248
Alignment:
Q  1184 gttgtcatacaaatagttgttcaaataacacacc 1217  Q
    ||||||| ||||||||||||||||||||||||||    
T  17367215 gttgtcacacaaatagttgttcaaataacacacc 17367248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Original strand, 22819769 - 22819833
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||    
T  22819769 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctct 22819833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1212
Target Start/End: Complemental strand, 23662268 - 23662211
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataac 1212  Q
    |||||||||||||||||||||||  |||| ||||||   |||| ||||||||||||||    
T  23662268 ttctttgtaaatttatggttatcaaataaattgtcaattaaatggttgttcaaataac 23662211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 33093068 - 33093003
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||| |   || ||||||||||| || || |||| ||||||||||||||||||||||    
T  33093068 ttctttgtaaattaactattgtctcataagttatcgtataaatggttgttcaaataacacacctct 33093003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1224
Target Start/End: Original strand, 42491193 - 42491262
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 1224  Q
    |||||||| || |||||||| || || |||||||||  ||||| ||||||||||||||||| ||| ||||    
T  42491193 ttctttgtgaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactccttaa 42491262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1215
Target Start/End: Original strand, 46038782 - 46038840
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    ||||||||||||||||| |||||  | ||||||||||  ||||| ||||||||||||||||    
T  46038782 ttctttgtaaatttatgattatcataaaagttgtcat--aaataattgttcaaataacaca 46038840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1150 - 1230
Target Start/End: Complemental strand, 47744470 - 47744389
Alignment:
Q  1150 cattgttctttgtaaatttatggttatctcataagttgtcatacaaa-tagttgttcaaataacacacctctttaagaaaaa 1230  Q
    |||| ||||||||||| |||||||| || || ||||| |||  |||| ||||||||||||||||||| ||||| || |||||    
T  47744470 catttttctttgtaaaattatggttgtcccaaaagttatcaatcaaaatagttgttcaaataacacaactcttaaaaaaaaa 47744389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-19; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-19
Query Start/End: Original strand, 1157 - 1218
Target Start/End: Original strand, 31433611 - 31433672
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacct 1218  Q
    |||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  31433611 ctttgtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 31433672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 1155 - 1218
Target Start/End: Complemental strand, 29706655 - 29706592
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacct 1218  Q
    |||||||||||||||||||||||| | ||||||||| | ||||  |||||||||||||||||||    
T  29706655 ttctttgtaaatttatggttatcttaaaagttgtcacagaaatgattgttcaaataacacacct 29706592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Original strand, 11597756 - 11597821
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    |||||||||||| ||||||| || ||||||||||||  ||||| | ||||||||||||||||||||    
T  11597756 ttctttgtaaatctatggttgtcccataagttgtcaagcaaatggatgttcaaataacacacctct 11597821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Original strand, 27357613 - 27357678
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||||||| || | ||| ||||||||| ||||||| || ||||||||||||||||||    
T  27357613 ttctttgtaaatttatgattgtatcaaaagttgtcacacaaatatttattcaaataacacacctct 27357678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1155 - 1224
Target Start/End: Complemental strand, 44517913 - 44517844
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 1224  Q
    |||||||||||||||| |||||| || ||||| ||| || ||| ||||||||||||||||| ||||||||    
T  44517913 ttctttgtaaatttatagttatcccaaaagttatcacacgaatggttgttcaaataacacaactctttaa 44517844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1158 - 1221
Target Start/End: Complemental strand, 1821055 - 1820992
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    ||||||||| |||| || || |||||||||||||||||| | |||||||||| |||||||||||    
T  1821055 tttgtaaatctatgattgtcacataagttgtcatacaaacaattgttcaaatcacacacctctt 1820992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1158 - 1221
Target Start/End: Complemental strand, 37610734 - 37610671
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||||||||||||||  ||||||| |||||||| |||| ||| ||||||||||||| |||||    
T  37610734 tttgtaaatttatggttggctcataaattgtcatataaattgttattcaaataacacaactctt 37610671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Complemental strand, 6949932 - 6949866
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||| |||||||||  |||||  | ||||||||| ||||||||||||||| ||||||||||||||    
T  6949932 ttctttataaatttatatttatcgtaaaagttgtcacacaaatagttgttcagataacacacctctt 6949866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Complemental strand, 10889997 - 10889934
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||| ||||    
T  10889997 ttctttgtaaatt-atggttgtcacaaaagttgtcaaccaaatagttgttcaaataacactcctc 10889934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Original strand, 13489782 - 13489845
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||| ||||    
T  13489782 ttctttgtaaatt-atggttgtcccagaagttgtcaaccaaatagttgttcaaataacactcctc 13489845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1155 - 1215
Target Start/End: Original strand, 31975110 - 31975169
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    |||||||||||| ||| ||| ||| ||||||| ||||| ||||||||||||||||||||||    
T  31975110 ttctttgtaaatctatagttgtcttataagttatcata-aaatagttgttcaaataacaca 31975169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1181 - 1216
Target Start/End: Complemental strand, 4862346 - 4862311
Alignment:
Q  1181 taagttgtcatacaaatagttgttcaaataacacac 1216  Q
    |||||||||||| |||||||||||||||||||||||    
T  4862346 taagttgtcatataaatagttgttcaaataacacac 4862311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Original strand, 29154898 - 29154964
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    ||||||||||||| || ||| || ||||||||||||  ||||| |||||||||||||||| |||||||    
T  29154898 ttctttgtaaatt-atcgttgtcccataagttgtcaaccaaatggttgttcaaataacactcctcttt 29154964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1218
Target Start/End: Complemental strand, 32158748 - 32158685
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacct 1218  Q
    ||||||||||||||||| || | || ||||||||||| |||||  | |||||||||||||||||    
T  32158748 ttctttgtaaatttatgattgtttcgtaagttgtcatgcaaatgatcgttcaaataacacacct 32158685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1214
Target Start/End: Complemental strand, 33358109 - 33358051
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 1214  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| ||||||||||||||||    
T  33358109 ttctttgtaaatt-atggttgtcacataagttgtcaaccaaatggttgttcaaataacac 33358051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1176 - 1218
Target Start/End: Original strand, 41451768 - 41451810
Alignment:
Q  1176 tctcataagttgtcatacaaatagttgttcaaataacacacct 1218  Q
    |||| |||||||||||| |||| ||||||||||||||||||||    
T  41451768 tctcgtaagttgtcatataaatggttgttcaaataacacacct 41451810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1157 - 1219
Target Start/End: Original strand, 46281558 - 46281620
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||||||||| ||  ||| ||||||   ||||| |||||||||||||||||||||    
T  46281558 ctttgtaaatttatggttgtcaaatatgttgtctatcaaatggttgttcaaataacacacctc 46281620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1215
Target Start/End: Original strand, 12127983 - 12128044
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtca-tacaaatagttgttcaaataacaca 1215  Q
    ||||||| |||| ||||||| || |||||||| ||| ||||||| |||||||||||||||||    
T  12127983 ttctttggaaatctatggttgtcccataagttatcaatacaaatggttgttcaaataacaca 12128044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1178 - 1219
Target Start/End: Complemental strand, 32266269 - 32266228
Alignment:
Q  1178 tcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    ||||||| |||||| ||||||||||||||||||| |||||||    
T  32266269 tcataaggtgtcatgcaaatagttgttcaaataagacacctc 32266228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 50328092 - 50328028
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||    
T  50328092 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctct 50328028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Original strand, 50824861 - 50824925
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||| |||||| | ||||||||||||   ||||| |||||||||||||||| |||||    
T  50824861 ttctttgtaaatt-atggttgtatcataagttgtccaccaaatggttgttcaaataacactcctct 50824925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1157 - 1221
Target Start/End: Original strand, 24795370 - 24795434
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||    
T  24795370 ctttataaatttatggttgtctcataagttgtcaaacaaatagttgttcaaataacatacctctt 24795434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1158 - 1222
Target Start/End: Original strand, 6445302 - 6445366
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    ||||||||||||||||| || ||||||||||||  ||||| || |||||||||||||| ||||||    
T  6445302 tttgtaaatttatggttgtcccataagttgtcaatcaaatggtcgttcaaataacacatctcttt 6445366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Original strand, 37754681 - 37754748
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||  ||| |  || |||||||||||||||| |||||| |||||||||||||||||    
T  37754681 ttctttgtaaatttaaagttgttccaaaagttgtcatacaaatggttgtttaaataacacacctcttt 37754748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Original strand, 40517377 - 40517444
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||||||| ||| ||||| ||||||| ||||  |||||||||||| |||| |||||    
T  40517377 ttctttgtaaatttatggttgtcttataagatgtcataaaaatgattgttcaaataatacacatcttt 40517444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1155 - 1213
Target Start/End: Original strand, 6182347 - 6182405
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 1213  Q
    |||||| ||||||||| ||| ||  |||| |||||||||||||||||||||||||||||    
T  6182347 ttctttataaatttattgttgtccaataaattgtcatacaaatagttgttcaaataaca 6182405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1157 - 1219
Target Start/End: Complemental strand, 10644751 - 10644689
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||||||||| ||  ||||||||||   ||||| |||||||||||||||||||||    
T  10644751 ctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctc 10644689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1172 - 1217
Target Start/End: Original strand, 2621917 - 2621962
Alignment:
Q  1172 gttatctcataagttgtcatacaaatagttgttcaaataacacacc 1217  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||    
T  2621917 gttacctcataagttgtcatacaaatgattgttcaaataacacacc 2621962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 36969626 - 36969561
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    |||||||||||  ||||||| || |||||||||||| |||||| | ||||||||||||||| ||||    
T  36969626 ttctttgtaaaaatatggttgtcgcataagttgtcaaacaaatggatgttcaaataacacaactct 36969561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1214
Target Start/End: Complemental strand, 14707294 - 14707236
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 1214  Q
    ||||||||||||| ||| || ||||||||||||||   ||||||||||||||||||||||    
T  14707294 ttctttgtaaatt-atgattgtctcataagttgtccaccaaatagttgttcaaataacac 14707236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1158 - 1221
Target Start/End: Original strand, 25018490 - 25018553
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||||||||||| || ||  |||| ||||| |||||||| ||||||||||||||||| ||||    
T  25018490 tttgtaaatttatgattgtcatataaattgtcttacaaataattgttcaaataacacacatctt 25018553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1213
Target Start/End: Complemental strand, 144208 - 144150
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 1213  Q
    ||||||||||||||||||||||| || || || ||||| |||| |||||| ||||||||    
T  144208 ttctttgtaaatttatggttatcacaaaaattatcatagaaatggttgttgaaataaca 144150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Complemental strand, 36885439 - 36885374
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    ||||||||||||| |||||| || |||||||||||   ||||| |||||||||||||||| ||||||    
T  36885439 ttctttgtaaatt-atggttgtcccataagttgtccaccaaatggttgttcaaataacactcctctt 36885374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1216
Target Start/End: Original strand, 39465614 - 39465675
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 1216  Q
    |||||| ||| ||||||||| | ||| ||||||||  | |||||||||||||||||||||||    
T  39465614 ttctttataattttatggttgtttcaaaagttgtctcataaatagttgttcaaataacacac 39465675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-18; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1155 - 1215
Target Start/End: Complemental strand, 20532414 - 20532354
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  20532414 ttctttataaatttatggttatcccataagttatcatacaaatagttgttcaaataacaca 20532354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Original strand, 44050134 - 44050201
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||||||| ||||| ||||||||  |||||| ||||||||||||||||||||||||    
T  44050134 ttctttgtaaatttatggttgtctcaaaagttgtcgcacaaatggttgttcaaataacacacctcttt 44050201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Complemental strand, 3412506 - 3412442
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||||||||||| | ||| ||||||||| | ||||||||||||||| ||||||||||    
T  3412506 ttctttgtaaatttatggttgtttcaaaagttgtcacataaatagttgttcaaacaacacacctc 3412442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1155 - 1215
Target Start/End: Complemental strand, 44977451 - 44977391
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    |||||||||||||||||||| ||||||||||| || | ||||| |||||||||||||||||    
T  44977451 ttctttgtaaatttatggttgtctcataagttttcgttcaaatggttgttcaaataacaca 44977391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1162 - 1222
Target Start/End: Complemental strand, 5054117 - 5054057
Alignment:
Q  1162 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    ||||||||||||| ||||| ||||||||||| |||||||| || |||||||||| ||||||    
T  5054117 taaatttatggttgtctcaaaagttgtcatataaatagttttttaaataacacaactcttt 5054057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Original strand, 9521927 - 9521991
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||||||||||| ||||| ||||| ||| |||||||  | |||||||||||||||||    
T  9521927 ttctttgtaaatttatggttgtctcaaaagttatcacacaaataaatattcaaataacacacctc 9521991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Original strand, 14255422 - 14255486
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||||||||||| || || ||||||||  | |||| |||||||||||||||||||||    
T  14255422 ttctttgtaaatttatggttgtcccaaaagttgtcgcataaatggttgttcaaataacacacctc 14255486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Complemental strand, 23352858 - 23352792
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| |||||||||||||||| |||||||    
T  23352858 ttctttgtaaatt-atggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctcttt 23352792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Original strand, 31296657 - 31296724
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||||||| ||  | ||||||||| || ||| ||||||||||||||||| ||||||    
T  31296657 ttctttgtaaatttatggttgtcataaaagttgtcacactaatggttgttcaaataacacatctcttt 31296724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1155 - 1214
Target Start/End: Original strand, 44254721 - 44254779
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 1214  Q
    ||||||||||||| ||||||||| ||||||||||||  ||||| ||||||||||||||||    
T  44254721 ttctttgtaaatt-atggttatcccataagttgtcaatcaaatggttgttcaaataacac 44254779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1157 - 1219
Target Start/End: Complemental strand, 34134720 - 34134658
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||||||||| ||  ||||||||||   ||||| |||||||||||||||||||||    
T  34134720 ctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctc 34134658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1155 - 1223
Target Start/End: Original strand, 1863775 - 1863841
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 1223  Q
    |||||||||||||||||||| ||||| |||||| |  |||||| |||||||||  ||||||||||||||    
T  1863775 ttctttgtaaatttatggttgtctcaaaagttgcc--acaaatggttgttcaagcaacacacctcttta 1863841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Original strand, 32344616 - 32344680
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    ||||||||||||||||||||||   | || |||||| |||||||  |||||||||||||||||||    
T  32344616 ttctttgtaaatttatggttattctaaaaattgtcacacaaataactgttcaaataacacacctc 32344680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1158 - 1222
Target Start/End: Complemental strand, 36436753 - 36436690
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||||||  ||||||||||| ||||||| | ||||||||||| ||| ||||||    
T  36436753 tttgtaaatttatggttataccataagttgtcttacaaattg-tgttcaaataatacaactcttt 36436690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1155 - 1227
Target Start/End: Original strand, 37105758 - 37105828
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaagaa 1227  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||| ||| ||||||||    
T  37105758 ttctttgtaaatt-atggttgtcacaaaagttgtcaaccaaatagttgttcaaataacactcct-tttaagaa 37105828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1167 - 1222
Target Start/End: Complemental strand, 3012792 - 3012737
Alignment:
Q  1167 ttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||| || ||||||||||||  ||||| |||||||||||||||| |||||||    
T  3012792 ttatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctcttt 3012737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1158 - 1225
Target Start/End: Original strand, 13765523 - 13765589
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaag 1225  Q
    |||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| ||||||||||    
T  13765523 tttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctctttaag 13765589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1214
Target Start/End: Original strand, 42430769 - 42430828
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 1214  Q
    ||||||||||| |||||||| |  || ||||||||| |||||| ||||||||||||||||    
T  42430769 ttctttgtaaacttatggttgttccaaaagttgtcacacaaatggttgttcaaataacac 42430828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Complemental strand, 3097813 - 3097747
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  3097813 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 3097747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Complemental strand, 13333122 - 13333056
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  13333122 ttctttataaaattttggttgtctcaaaagttgtcatataaatcgatgttcaaataacacaactctt 13333056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1158 - 1216
Target Start/End: Complemental strand, 16199661 - 16199603
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 1216  Q
    ||||||||||||||||| |  ||||| || ||||||||||| || ||||||||||||||    
T  16199661 tttgtaaatttatggttgtaccataaattatcatacaaataattattcaaataacacac 16199603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 1907715 - 1907650
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    |||||||||||||||||||| ||  | ||||||||||  ||||  |||||||||||||||| ||||    
T  1907715 ttctttgtaaatttatggttgtcatacaagttgtcatctaaatgattgttcaaataacacaactct 1907650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1033 - 1074
Target Start/End: Original strand, 3723881 - 3723922
Alignment:
Q  1033 aagagaaatgttatttatataatcattttgtgacaattttta 1074  Q
    |||| ||||| |||||||||||| ||||||||||||||||||    
T  3723881 aagaaaaatgatatttatataatgattttgtgacaattttta 3723922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Original strand, 5032043 - 5032108
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    |||||||||||||||||||| ||  ||||||||||   ||||  ||||||||||||||||| ||||    
T  5032043 ttctttgtaaatttatggttgtcaaataagttgtctatcaaaaggttgttcaaataacacatctct 5032108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1216
Target Start/End: Complemental strand, 14891040 - 14890979
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 1216  Q
    |||||||||||| ||||||| |  |||||||||| |  ||||| ||||||||||||||||||    
T  14891040 ttctttgtaaatctatggttgttccataagttgttaatcaaatggttgttcaaataacacac 14890979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1179 - 1224
Target Start/End: Complemental strand, 30220733 - 30220688
Alignment:
Q  1179 cataagttgtcatacaaatagttgttcaaataacacacctctttaa 1224  Q
    ||||||||||| || ||||||| |||||||||||| ||||||||||    
T  30220733 cataagttgtcctaaaaatagtggttcaaataacatacctctttaa 30220688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1158 - 1215
Target Start/End: Complemental strand, 30339813 - 30339756
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    ||||| |||||||| || ||||||||||| ||||  |||| |||||||||||||||||    
T  30339813 tttgttaatttatgattgtctcataagttctcatttaaatggttgttcaaataacaca 30339756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1216
Target Start/End: Original strand, 36625207 - 36625268
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 1216  Q
    |||| ||||||||||||||| ||| | |  |||||||||||||| || ||||||||||||||    
T  36625207 ttctctgtaaatttatggttgtcttaaatattgtcatacaaataattattcaaataacacac 36625268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1158 - 1215
Target Start/End: Original strand, 39147888 - 39147945
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    |||||||||||||| || || || ||||||||||  |||| |||||||||||||||||    
T  39147888 tttgtaaatttatgattgtcccaaaagttgtcattaaaatggttgttcaaataacaca 39147945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Original strand, 43520977 - 43521042
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||| |||||| ||| ||| ||||||||  ||||  |||||||||||||| ||||||    
T  43520977 ttctttgtaaattgatggttgtcttataggttgtcatgtaaatgattgttcaaataacatacctct 43521042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-16
Query Start/End: Original strand, 1158 - 1210
Target Start/End: Complemental strand, 34084578 - 34084526
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaata 1210  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  34084578 tttgcaaatttatggttgtctcataagttgtcatacaaatagttgttcaaata 34084526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1155 - 1229
Target Start/End: Complemental strand, 25127782 - 25127708
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaagaaaa 1229  Q
    |||||||||||||||||||| || || || |||||  |||||| |||||||||||||||||||||| ||| ||||    
T  25127782 ttctttgtaaatttatggttgtcccagaatttgtcgcacaaatggttgttcaaataacacacctctataataaaa 25127708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1155 - 1215
Target Start/End: Complemental strand, 3552107 - 3552047
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    ||||||||||||||||| ||||| || ||||| |||| ||||| |||||||||||||||||    
T  3552107 ttctttgtaaatttatgattatcacaaaagttatcatccaaatggttgttcaaataacaca 3552047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1155 - 1215
Target Start/End: Original strand, 30945933 - 30945993
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    |||||||||||| ||||||| |  |||||||| |||||||||| |||||||||||||||||    
T  30945933 ttctttgtaaatctatggttgttccataagttttcatacaaatggttgttcaaataacaca 30945993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Original strand, 30956191 - 30956255
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||| ||||||| || |||||||| ||||| |||| ||||||||||||||| |||||    
T  30956191 ttctttgtaaatctatggttgtcccataagttttcatataaatggttgttcaaataacaaacctc 30956255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 33019104 - 33019039
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||| |||| |||| |||||| |||| |||| |||||||||||| |||||||||| |||||||    
T  33019104 ttctttgcaaatctatgattatcttataaattgttatacaaatagtttttcaaataactcacctct 33019039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Original strand, 3832583 - 3832646
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| |||||||||||||||| ||||    
T  3832583 ttctttgtaaatt-atggttgtcccataagttgtcaatcaaatggttgttcaaataacactcctc 3832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1155 - 1223
Target Start/End: Original strand, 26595468 - 26595536
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 1223  Q
    ||||||||||| || ||||| | ||| ||||||||||| |||| | ||||||||||||||| |||||||    
T  26595468 ttctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacacaactcttta 26595536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Original strand, 4820486 - 4820552
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    ||||||||||| || || || ||||| ||||| ||||  |||||||||||||||||||||| |||||    
T  4820486 ttctttgtaaaattttgattgtctcaaaagttatcatgtaaatagttgttcaaataacacaactctt 4820552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Original strand, 16199569 - 16199635
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  16199569 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 16199635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1213
Target Start/End: Original strand, 30621859 - 30621917
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 1213  Q
    |||||||||||| |||||||||  |||||||| |||  ||||| |||||||||||||||    
T  30621859 ttctttgtaaatatatggttattccataagttatcaatcaaatggttgttcaaataaca 30621917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Complemental strand, 31883255 - 31883189
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    ||||||||||| |||||||| || || || ||||||  ||||||||||||||||||| ||| |||||    
T  31883255 ttctttgtaaaattatggttgtcccaaaaattgtcaatcaaatagttgttcaaataatacaactctt 31883189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1158 - 1220
Target Start/End: Original strand, 33656893 - 33656955
Alignment:
Q  1158 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||||||| ||  |||| ||||||  ||||| ||||||||||||||||| ||||    
T  33656893 tttgtaaatttatggttgtcaaataaattgtcaatcaaatggttgttcaaataacacatctct 33656955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1224
Target Start/End: Original strand, 10826622 - 10826691
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 1224  Q
    |||||||||||||  ||||| || || ||||| |||  ||||| |||||||||||||||||| |||||||    
T  10826622 ttctttgtaaattagtggttgtcacaaaagttatcactcaaatggttgttcaaataacacacttctttaa 10826691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 18141252 - 18141188
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||    
T  18141252 ttctttgtaaatt-atggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcctct 18141188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.00000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Complemental strand, 24405907 - 24405841
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||||||||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||| ||||    
T  24405907 ttctttgtaaatttatagttgtttcaaaagttgtcaaacaaatagttgttcaaataacacacttctt 24405841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Original strand, 27546185 - 27546249
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    ||||||||| ||||||| || ||||| ||||||||| |||||||||| |||||||||||||||||    
T  27546185 ttctttgtacatttatgattgtctcaaaagttgtcacacaaatagttattcaaataacacacctc 27546249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1157 - 1221
Target Start/End: Original strand, 18695440 - 18695504
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||||||||||||||| ||  ||||||||||   ||||| |||||||||||||||||||||||    
T  18695440 ctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctctt 18695504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1157 - 1219
Target Start/End: Complemental strand, 6940099 - 6940037
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||||||||| ||  ||||||||||   ||||| |||||||||||||||||||||    
T  6940099 ctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctc 6940037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Complemental strand, 41175657 - 41175592
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| |||||||||||||||| ||||||    
T  41175657 ttctttgtaaatt-atggttgtcacataagttgtcaaccaaatggttgttcaaataacactcctctt 41175592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1156 - 1212
Target Start/End: Complemental strand, 1293069 - 1293013
Alignment:
Q  1156 tctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataac 1212  Q
    ||||||||||||||||||| ||  | |||||||||||||||| ||| ||||||||||    
T  1293069 tctttgtaaatttatggttgtccaaaaagttgtcatacaaatggttattcaaataac 1293013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1157 - 1221
Target Start/End: Complemental strand, 9939381 - 9939317
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||||||||||||||| ||  |||| |||||   ||||| |||||||||||||||||||||||    
T  9939381 ctttgtaaatttatggttgtcaaataaattgtctatcaaatggttgttcaaataacacacctctt 9939317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Original strand, 10649555 - 10649621
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||||    
T  10649555 ttctttgtaaatt-atggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 10649621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1214
Target Start/End: Complemental strand, 15952996 - 15952938
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 1214  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| ||||||||||||||||    
T  15952996 ttctttgtaaatt-atggttgtcacataagttgtcaaccaaatggttgttcaaataacac 15952938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Complemental strand, 33655365 - 33655298
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||| ||||||||||||| |  || ||||| ||||| |||||||| ||||||||||||| ||||||    
T  33655365 ttctttataaatttatggttgtaccaaaagttatcataaaaatagttattcaaataacacaactcttt 33655298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Original strand, 17626105 - 17626171
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  17626105 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 17626171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 19839937 - 19839873
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||| |||||| || || ||||| |||  |||||||||||||||||||||| |||||    
T  19839937 ttctttgtaaatt-atggttgtcccaaaagttatcaaccaaatagttgttcaaataacacgcctct 19839873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1032 - 1073
Target Start/End: Complemental strand, 34216591 - 34216550
Alignment:
Q  1032 aaagagaaatgttatttatataatcattttgtgacaattttt 1073  Q
    ||||| ||||| |||||||||||| |||||||||||||||||    
T  34216591 aaagaaaaatgatatttatataattattttgtgacaattttt 34216550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Original strand, 34546535 - 34546600
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    |||||| || |||||| ||| || || || |||||||||||| |||||||||||||||||| ||||    
T  34546535 ttctttatacatttatagttgtcccaaaaattgtcatacaaaaagttgttcaaataacacaactct 34546600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Original strand, 43441858 - 43441922
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||| |||||| ||| | |||||||||  ||||| |||||||||||||||| |||||    
T  43441858 ttctttgtaaatt-atggttgtcttaaaagttgtcaaccaaatggttgttcaaataacactcctct 43441922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000005; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000005
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 52564601 - 52564536
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    |||||||||||| ||||||| || |||||||||||||| |||| ||||||||||||||| ||||||    
T  52564601 ttctttgtaaatctatggttgtcccataagttgtcatagaaatggttgttcaaataacatacctct 52564536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1155 - 1215
Target Start/End: Complemental strand, 34627833 - 34627773
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    |||||||||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||    
T  34627833 ttctttgtaaatttatggttgtcttataagttatcataaaaataattgttcaaataacaca 34627773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1155 - 1223
Target Start/End: Complemental strand, 46966052 - 46965984
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 1223  Q
    ||||||||||||||||| || ||  | ||||||||| |||||| |||||||||||||||||||||||||    
T  46966052 ttctttgtaaatttatgattgtccgaaaagttgtcacacaaatggttgttcaaataacacacctcttta 46965984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 1162 - 1213
Target Start/End: Complemental strand, 11075321 - 11075270
Alignment:
Q  1162 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 1213  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||||||||||    
T  11075321 taaatttatggttgtctcaaaagttgtcatacaaatggttgttcaaataaca 11075270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1155 - 1229
Target Start/End: Complemental strand, 819165 - 819091
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaagaaaa 1229  Q
    ||||||||||||| ||| |||||||| ||||||||||  |||| |||||| |||||||||| ||||||| |||||    
T  819165 ttctttgtaaattaatgattatctcaaaagttgtcatcaaaatggttgtttaaataacacatctctttatgaaaa 819091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1162 - 1215
Target Start/End: Complemental strand, 11056878 - 11056825
Alignment:
Q  1162 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    ||||||||||||| ||||| ||||||| |||||||| |||||||||||||||||    
T  11056878 taaatttatggttgtctcaaaagttgttatacaaatggttgttcaaataacaca 11056825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1155 - 1216
Target Start/End: Original strand, 27511844 - 27511904
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 1216  Q
    |||||||||||||||||||| || || ||||||||| |||||| ||||||||||||||||||    
T  27511844 ttctttgtaaatttatggttgtc-caaaagttgtcacacaaattgttgttcaaataacacac 27511904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Original strand, 54007581 - 54007646
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    |||||| ||||||||||||| ||| ||||||||||||||| || || ||||||||||||| |||||    
T  54007581 ttctttataaatttatggttgtcttataagttgtcatacagatggtcgttcaaataacacgcctct 54007646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 1155 - 1223
Target Start/End: Complemental strand, 46965961 - 46965893
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 1223  Q
    ||||||||||||||||| || ||  | ||||||||| |||||| ||||||||||||||||| |||||||    
T  46965961 ttctttgtaaatttatgattgtcctaaaagttgtcacacaaattgttgttcaaataacacatctcttta 46965893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1157 - 1219
Target Start/End: Complemental strand, 29030756 - 29030694
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 1219  Q
    |||||||||||  ||| |||| || |||||||||  |||||||||||||||||||||||||||    
T  29030756 ctttgtaaattagtggctatcacaaaagttgtcactcaaatagttgttcaaataacacacctc 29030694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 55361185 - 55361120
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 1220  Q
    ||||||||||||  |||||| || |||||||| |||| ||||||||||||||||||| ||| ||||    
T  55361185 ttctttgtaaatcaatggttgtcacataagttttcattcaaatagttgttcaaataaaacaactct 55361120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1155 - 1215
Target Start/End: Complemental strand, 12762641 - 12762581
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    |||||||||||||||||||| || ||||| |||||||  ||||  ||||||||||||||||    
T  12762641 ttctttgtaaatttatggttgtcccataaattgtcatgtaaatgattgttcaaataacaca 12762581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1155 - 1211
Target Start/End: Original strand, 26645146 - 26645201
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataa 1211  Q
    ||||||||||||| ||| ||||| ||||| ||||||| |||||||||||||||||||    
T  26645146 ttctttgtaaatt-atgattatcccataaattgtcatccaaatagttgttcaaataa 26645201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1214
Target Start/End: Complemental strand, 6093830 - 6093771
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 1214  Q
    ||||||| |||| ||||||||||  ||||||||||| | |||||||| ||||||||||||    
T  6093830 ttctttgaaaatatatggttatccaataagttgtcaaataaatagtttttcaaataacac 6093771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1163 - 1222
Target Start/End: Complemental strand, 6178369 - 6178310
Alignment:
Q  1163 aaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||| | ||  ||||||||||| |||| ||||||||||||||||| ||||||    
T  6178369 aaatttatggttgtatcgaaagttgtcataaaaatggttgttcaaataacacaactcttt 6178310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1162 - 1221
Target Start/End: Original strand, 33256435 - 33256494
Alignment:
Q  1162 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    ||||||||||||| ||  | ||||||||| |||||| ||||||||||||||||| |||||    
T  33256435 taaatttatggttgtcctaaaagttgtcacacaaatggttgttcaaataacacatctctt 33256494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1214
Target Start/End: Complemental strand, 39697173 - 39697115
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 1214  Q
    ||||||||||||| |||||| || || |||||||||  ||||||||||||||||||||||    
T  39697173 ttctttgtaaatt-atggttgtcccaaaagttgtcaatcaaatagttgttcaaataacac 39697115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1162 - 1221
Target Start/End: Original strand, 45205403 - 45205462
Alignment:
Q  1162 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||||||  || ||||| ||||||||| |||||| ||||||||||||| |||||||||    
T  45205403 taaatttataattgtctcaaaagttgtcacacaaatggttgttcaaataatacacctctt 45205462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1155 - 1222
Target Start/End: Complemental strand, 51465865 - 51465799
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||||    
T  51465865 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 51465799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1167 - 1221
Target Start/End: Original strand, 6999301 - 6999355
Alignment:
Q  1167 ttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||||| || ||||||||||||  ||||| |||||||||||||||| ||||||    
T  6999301 ttatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctctt 6999355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1220
Target Start/End: Complemental strand, 9158824 - 9158759
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaat-agttgttcaaataacacacctct 1220  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| ||||||||||||||||| |||||    
T  9158824 ttctttgtaaatt-atggttgtcacataagttgtcaaccaaattagttgttcaaataacactcctct 9158759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1161 - 1215
Target Start/End: Complemental strand, 9719394 - 9719340
Alignment:
Q  1161 gtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    ||||| ||||||||||| || |||||||||  ||||| |||||||||||||||||    
T  9719394 gtaaaattatggttatcccaaaagttgtcaatcaaatggttgttcaaataacaca 9719340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Original strand, 21217631 - 21217697
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  21217631 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 21217697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Complemental strand, 37057009 - 37056943
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    ||||||||||| |  ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  37057009 ttctttgtaaaatattggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 37056943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1034 - 1072
Target Start/End: Original strand, 50146487 - 50146525
Alignment:
Q  1034 agagaaatgttatttatataatcattttgtgacaatttt 1072  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  50146487 agagaaatgatatttgtataatcattttgtgacaatttt 50146525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1224
Target Start/End: Complemental strand, 13348086 - 13348017
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 1224  Q
    ||||||||||| || ||||| || || ||||||||||| |||| | ||||||||||||| | ||||||||    
T  13348086 ttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgttcaaataacataactctttaa 13348017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1157 - 1222
Target Start/End: Complemental strand, 29573305 - 29573240
Alignment:
Q  1157 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 1222  Q
    |||||||||||||||||| ||  |||| |||||   ||||| ||||||||||||||| ||||||||    
T  29573305 ctttgtaaatttatggttgtcaaataaattgtctatcaaatggttgttcaaataacatacctcttt 29573240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1219
Target Start/End: Original strand, 36412243 - 36412307
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatac-aaatagttgttcaaataacacacctc 1219  Q
    ||||||||||||| |||||| || |||||||||||| || |||| |||||||||||||||| ||||    
T  36412243 ttctttgtaaatt-atggttgtcccataagttgtcaaaccaaatggttgttcaaataacactcctc 36412307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1215
Target Start/End: Original strand, 45754758 - 45754819
Alignment:
Q  1155 ttctttgtaaattt-atggttatctcataagttgtcatacaaatagttgttcaaataacaca 1215  Q
    |||||||||||||| |||||| ||| ||||||| |||  ||||| |||||||||||||||||    
T  45754758 ttctttgtaaattttatggttgtctaataagttatcaatcaaatggttgttcaaataacaca 45754819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1155 - 1221
Target Start/End: Original strand, 12052 - 12117
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 1221  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||| ||||||    
T  12052 ttctttgtaaatt-atggttgtcgcaaaagttgtcaaccaaatagttgttcaaataacactcctctt 12117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 30; Significance: 0.0000007; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1216
Target Start/End: Complemental strand, 22887 - 22826
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 1216  Q
    |||||| ||| ||||||||| | ||| ||||||||  | |||||||||||||||||||||||    
T  22887 ttctttataattttatggttgtttcaaaagttgtctcataaatagttgttcaaataacacac 22826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1155 - 1216
Target Start/End: Complemental strand, 213802 - 213741
Alignment:
Q  1155 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 1216  Q
    |||||| ||||||||||||| ||||| || |||||||  ||||  |||||||||||||||||    
T  213802 ttctttataaatttatggttgtctcaaaaattgtcatggaaatgattgttcaaataacacac 213741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1162 - 1223
Target Start/End: Complemental strand, 469581 - 469520
Alignment:
Q  1162 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 1223  Q
    ||||||||||||| |  || || || |||| ||||||||||||||||||||||| |||||||    
T  469581 taaatttatggtttttacaaaaattatcatccaaatagttgttcaaataacacaactcttta 469520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University