View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7074_high_10 (Length: 241)
Name: NF7074_high_10
Description: NF7074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7074_high_10 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 40646421 - 40646179
Alignment:
| Q |
1 |
tactagctattcttaactttctgtctcgtctcctttcctagaacatagtgaataccttcattatttgctctttaactatgttagtccaagtaagcacctt |
100 |
Q |
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|||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
40646421 |
tactagctattcttaactttttgtctcctctcctttcatagaacatagtgaataccttcactatctgctctttaactatgttagtccaagtaagcacctt |
40646322 |
T |
|
| Q |
101 |
aatgtagtttttgtgattgtaggttattttaatcagtagttatggatcgtagttggatgagtgctaaccgcgctagtaaagagtataagaaaggagtgac |
200 |
Q |
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||||||||||||||| | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
40646321 |
aatgtagtttttgtggtcgtaggttatttcagtcagtagttatggatcgtagttggatgagtgctaaccgcgctagtgaagagtataggaaaagagtgac |
40646222 |
T |
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| Q |
201 |
--aatttatacaatttgcttttgaaaaacttcctgagaataat |
241 |
Q |
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| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40646221 |
agagtttatacaatttgcttttgaaaaacttcctgagaataat |
40646179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 21371519 - 21371427
Alignment:
| Q |
10 |
ttcttaactttctgtctcgtctcctttcctagaacatagtgaataccttcattatttgctctttaactatgttagtccaagtaagcaccttaa |
102 |
Q |
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||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |
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| T |
21371519 |
ttcttaattttttgtctcctctcctttcctagaacatagtgaataccttcagtatcttctctttaactatgttagtccaagtaagcaccttaa |
21371427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 34501868 - 34502110
Alignment:
| Q |
1 |
tactagctattcttaactttctgtctcgtctcctttcctagaacatagtgaataccttcattatttgctctttaactatgttagtccaagtaagcacctt |
100 |
Q |
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||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |
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| T |
34501868 |
tactagctattattaactttctgtctcctcttctttcctagaacatagtgaataccttcattatctgctctttaactatattagtccaagtaaccacctt |
34501967 |
T |
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| Q |
101 |
aatgtagtttttgtgattgtaggttattttaatcagtagttatggatcgtagttggatgagtgctaaccgcgctagtaaagagtataagaaaggagtgac |
200 |
Q |
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|||||||| |||||| ||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
34501968 |
aatgtagtctttgtggttgtaggttatttcagtcagcagttatggatcgtagtcggatgagtgctaaccgcgctagtgaagagtataggaaaggagtgac |
34502067 |
T |
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| Q |
201 |
--aatttatacaatttgcttttgaaaaacttcctgagaataat |
241 |
Q |
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| |||||||||||||||||||||||||||| |||||||||| |
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| T |
34502068 |
agagtttatacaatttgcttttgaaaaacttcatgagaataat |
34502110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9109280 - 9109038
Alignment:
| Q |
1 |
tactagctattcttaactttctgtctcgtctcctttcctagaacatagtgaataccttcattatttgctctttaactatgttagtccaagtaagcacctt |
100 |
Q |
| |
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||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
9109280 |
tactagctattgttaattttctgtctcctctcctttcctagaacatagtgaataccttcactatctgctctttaactatgttagagcaagtaagcacctt |
9109181 |
T |
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| Q |
101 |
aatgtagtttttgtgattgtaggttattttaatcagtagttatggatcgtagttggatgagtgctaaccgcgctagtaaagagtataagaaaggagt-ga |
199 |
Q |
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|||||||| ||||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |
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| T |
9109180 |
aatgtagtctttgtgaatgtaggttttttcagtcagtagttatggatcgtagttggatgagtgctaaccgcgctagtgaagagtatactaaaggagtaga |
9109081 |
T |
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| Q |
200 |
c-aatttatacaatttgcttttgaaaaacttcctgagaataat |
241 |
Q |
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| | |||||||||||||||||||||||||||||| | |||||| |
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| T |
9109080 |
cgagtttatacaatttgcttttgaaaaacttcctaataataat |
9109038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 11766469 - 11766561
Alignment:
| Q |
10 |
ttcttaactttctgtctcgtctcctttcctagaacatagtgaataccttcattatttgctctttaactatgttagtccaagtaagcaccttaa |
102 |
Q |
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||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |
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| T |
11766469 |
ttcttaattttttgtctcctctcctttcctagaacatagtgaataccttcagtatcttctctttaactatgttagtccaagtaagcaccttaa |
11766561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3570739 - 3570796
Alignment:
| Q |
1 |
tactagctattcttaactttctgtctcgtctcctttcctagaacatagtgaatacctt |
58 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3570739 |
tactagctattcttaactttctgtctcctctcctttcctagaacatagtgaatacctt |
3570796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 41075714 - 41075781
Alignment:
| Q |
10 |
ttcttaactttctgtctcgtctcctttcctagaacatagtgaataccttcattatttgctctttaact |
77 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||| |
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| T |
41075714 |
ttcttaactttctgtctcctctcctttcctagaacatattgaataccttcactatctgctctttaact |
41075781 |
T |
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