View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7074_high_4 (Length: 462)
Name: NF7074_high_4
Description: NF7074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7074_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 10355473 - 10355049
Alignment:
| Q |
17 |
ggacatcaatacagtcccgattggggtcgaaccaactagtaaactggccggttctcggttcaactcgttgaactagccaattcactctggattttaaaac |
116 |
Q |
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| T |
10355473 |
ggacatcaatacagtcccgattggggtcgaaccaactagtaaactggccggttctcggttcaactcgttgaactagccaattcactcttgattttaaaac |
10355374 |
T |
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| Q |
117 |
attgattctaaggctttgccagactaagaggttttcaattctatagttaaaacgataatatatctccaagttaatgatatacgaagggcaaagtgacaat |
216 |
Q |
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| T |
10355373 |
attgattctaaggctttgccaaactaagaggttttcaattctatagttaaaacgataatatatctccaagttaatgatatacgaagggcaaagtgacaat |
10355274 |
T |
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| Q |
217 |
gaaggaaaatacttgagctacttacgttatgaatgttagccggatgattgagtgtatccttgggcaacatcgaagcatctgttaagacttgggacggatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10355273 |
gaaggaaaatacttgagctacttacgttatgaatgttagccggatgattgagtgtatccttgggcaacatcgaagcatctgttaagacttgggacggatt |
10355174 |
T |
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| Q |
317 |
tgcaggagaagaatcagaagttgaggatgaagttgatgtttgtccatgaatctcattgtcaagagaagtatctccttcaacaaagaaaagagaatctatg |
416 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10355173 |
tgcagcagaagaatcagaggttgaggatgaagttgatgtttgtccatgaacctcattgtcaagagaagtatctccttcaacaaagaaaagagaatctatg |
10355074 |
T |
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| Q |
417 |
ttcgactttggtagtgcatcgggtg |
441 |
Q |
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| T |
10355073 |
ttcgactttggtagtgcatcgggtg |
10355049 |
T |
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Back To:
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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 35717864 - 35717772
Alignment:
| Q |
209 |
gtgacaatgaaggaaaatacttgagctacttacgttatgaatgttagccggatgattgagtgtatccttgggcaacatcgaagcatctgttaa |
301 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||| | | ||||||| |||| ||||| |||||||| |||||||| ||||| |
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| T |
35717864 |
gtgacaagaaaggaaaatacttgagcaacttacgttatgaatgttatcagcatgattgcgtgtttcctttggcaacattgaagcatcggttaa |
35717772 |
T |
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