View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7074_high_5 (Length: 309)
Name: NF7074_high_5
Description: NF7074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7074_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 39082121 - 39081850
Alignment:
| Q |
13 |
aatatttaaggatatgtcactttgctgtttcaattatttggttactacttgtttgtactagtttgttccatatttttgtatttaaaagcttctactaaag |
112 |
Q |
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| T |
39082121 |
aatatttaaggatatgtcactttgctgtttcaattatttggttactacttgtttgtactagtttgttccatattgttgtatttaaaagcttctactaaag |
39082022 |
T |
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| Q |
113 |
taatatgttcgagaacttcgtcccagttacaattcttaatatatctttgctacttaaatgtaatgtatatatcgatgatggtaagtaagatagaaatcta |
212 |
Q |
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| T |
39082021 |
taatatgttcgagaacttcttcccagttacaattcttaatatatctttgctatttaaatgtaatgt--atatcgatgatggtaagtaagatagaaatcta |
39081924 |
T |
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| Q |
213 |
ttgaataaatgaaaatataagcagttgagctacttattaggaatctatatccaagaaatctattgaatatacgt |
286 |
Q |
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| T |
39081923 |
ttgaataaatgaaaatataagcagttgagctacttattaggaatctatatccaagaaatctattgaatatacgt |
39081850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 39086359 - 39086307
Alignment:
| Q |
194 |
taagtaagatagaaatctattgaataaatgaaaatataagcagttgagctact |
246 |
Q |
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| T |
39086359 |
taagtaagattgaaatctattcaataaatgaaaatataagcagttgagctact |
39086307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 39085774 - 39085736
Alignment:
| Q |
243 |
tacttattaggaatctatatccaagaaatctattgaata |
281 |
Q |
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| T |
39085774 |
tacttattaggaatctatatccaagaaatctattgaata |
39085736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 39086861 - 39086809
Alignment:
| Q |
13 |
aatatttaaggatatgtcactttgctgtttcaattatttggttactacttgtt |
65 |
Q |
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|||| |||||||||||| || |||||||||||||||||||||| ||||||||| |
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| T |
39086861 |
aataattaaggatatgttacattgctgtttcaattatttggtttctacttgtt |
39086809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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