View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7074_low_14 (Length: 227)

Name: NF7074_low_14
Description: NF7074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7074_low_14
NF7074_low_14
[»] chr4 (5 HSPs)
chr4 (15-209)||(48147167-48147361)
chr4 (15-179)||(48155877-48156041)
chr4 (94-201)||(49038411-49038518)
chr4 (127-178)||(50669529-50669580)
chr4 (137-181)||(45365790-45365834)
[»] chr8 (3 HSPs)
chr8 (80-181)||(4030301-4030402)
chr8 (137-179)||(12200788-12200830)
chr8 (137-179)||(12445216-12445258)
[»] chr5 (1 HSPs)
chr5 (75-186)||(42561844-42561955)
[»] chr2 (1 HSPs)
chr2 (80-166)||(29350884-29350970)
[»] chr3 (1 HSPs)
chr3 (92-160)||(47451425-47451493)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 48147167 - 48147361
Alignment:
Q  15 agcagagactcagtatacatggttaccagggatccaattggacacggaccgtcccagaatgagttatgctctagaagctgtcctttgtcgttatacttca 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48147167 agcagagactcagtatacatggtcaccagggatccaattggacacggaccgtcccagaatgagttatgctctagaagctgtcctttgtcgttatacttca 48147266  T
Q  115 acaattcagtttcaccatttgctccaataatgtcaccactttttgtggagcatataggggaaaagtagggaacgccatcaatagacaaattaaga 209  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48147267 acaattcagtttcaccatttgttccaataatgtcaccactttttgtggagcatataggggaaaagtagggaatgccatcaatagacaaattaaga 48147361  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 48155877 - 48156041
Alignment:
Q  15 agcagagactcagtatacatggttaccagggatccaattggacacggaccgtcccagaatgagttatgctctagaagctgtcctttgtcgttatacttca 114  Q
    |||| |||||| ||||||| ||| ||  ||||||||| ||||   |||||||||||||||||   ||||||||||||||||||| |||| |||||||| |    
T  48155877 agcaaagactctgtatacacggtcacttgggatccaaatggaagtggaccgtcccagaatgatccatgctctagaagctgtcctctgtcattatacttta 48155976  T
Q  115 acaattcagtttcaccatttgctccaataatgtcaccactttttgtggagcatataggggaaaag 179  Q
      ||||   | ||||| | || ||||| |||||||||| ||||||| |||||||| ||| |||||    
T  48155977 gtaatttgatatcaccgtctgttccaacaatgtcaccattttttgtagagcatattgggtaaaag 48156041  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 49038411 - 49038518
Alignment:
Q  94 gtcctttgtcgttatacttcaacaattcagtttcaccatttgctccaataatgtcaccactttttgtggagcatataggggaaaagtagggaacgccatc 193  Q
    |||||||||| | |||||||| ||||  | | | ||||| || ||||||||| | ||||||||||||  | |||||||||||||||||||||| ||||      
T  49038411 gtcctttgtcatcatacttcatcaatcgattataaccatctgttccaataatatgaccactttttgtacaacatataggggaaaagtagggaatgccact 49038510  T
Q  194 aatagaca 201  Q
    ||||||||    
T  49038511 aatagaca 49038518  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 50669580 - 50669529
Alignment:
Q  127 caccatttgctccaataatgtcaccactttttgtggagcatataggggaaaa 178  Q
    |||||| || |||||||||||||||| | ||||| |||||||||||||||||    
T  50669580 caccatctgttccaataatgtcaccattctttgtagagcatataggggaaaa 50669529  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 45365790 - 45365834
Alignment:
Q  137 tccaataatgtcaccactttttgtggagcatataggggaaaagta 181  Q
    ||||||||| ||||| |||||||| ||||||| ||||||||||||    
T  45365790 tccaataatatcaccgctttttgtagagcataaaggggaaaagta 45365834  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 4030301 - 4030402
Alignment:
Q  80 atgctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgctccaataatgtcaccactttttgtggagcatataggggaaaag 179  Q
    ||||||||| | |||||||||||| | |||||||| |||||||||  |||||| || ||||||||| ||||||||| |||| ||||| || |||||||||    
T  4030301 atgctctagcaactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcaccacttattgtagagcacattggggaaaag 4030400  T
Q  180 ta 181  Q
    ||    
T  4030401 ta 4030402  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 12200830 - 12200788
Alignment:
Q  137 tccaataatgtcaccactttttgtggagcatataggggaaaag 179  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  12200830 tccaataatatcaccactttttgtagagtatataggggaaaag 12200788  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 12445258 - 12445216
Alignment:
Q  137 tccaataatgtcaccactttttgtggagcatataggggaaaag 179  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  12445258 tccaataatatcaccactttttgtagagtatataggggaaaag 12445216  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 186
Target Start/End: Original strand, 42561844 - 42561955
Alignment:
Q  75 gagttatgctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgctccaataatgtcaccactttttgtggagcatatagggg 174  Q
    |||||||||||||||| ||  |||||||||||||| |||| |||| | ||  |||||| || ||||||||| |||||| |||||||  || ||| ||||     
T  42561844 gagttatgctctagaaactcccctttgtcgttatatttcaccaatccggtaccaccatctgttccaataatatcaccattttttgtataggataaagggc 42561943  T
Q  175 aaaagtagggaa 186  Q
    ||||||||||||    
T  42561944 aaaagtagggaa 42561955  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 29350970 - 29350884
Alignment:
Q  80 atgctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgctccaataatgtcaccactttttgtggagca 166  Q
    ||||||||| | |||||||||||| | |||||||| |||||||||  ||||||  | ||||||||| ||||||| | |||| |||||    
T  29350970 atgctctagcaactgtcctttgtcataatacttcaccaattcagtaccaccatccgttccaataatatcaccacctattgtagagca 29350884  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 47451425 - 47451493
Alignment:
Q  92 ctgtcctttgtcgttatacttcaacaattcagtttcaccatttgctccaataatgtcaccactttttgt 160  Q
    |||||||||||| |||||||| | |||| | || ||| ||| || ||||||||| ||||||||||||||    
T  47451425 ctgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgt 47451493  T

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