View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7074_low_3 (Length: 510)
Name: NF7074_low_3
Description: NF7074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7074_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 38179386 - 38179190
Alignment:
| Q |
20 |
cactaacctaaaattgtcaggaaaaaggagaagatgggtcactgagagaagaggaaaacagagctgttgcggggtgctgggctgagagaagagagatgac |
119 |
Q |
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| T |
38179386 |
cactaacctaaaattgtcaggaaaaaggagaagatgggtcaatgagagaagaggaaaacagagctgttgcggggtgctgggctgagagaggagagatgac |
38179287 |
T |
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| Q |
120 |
ggttggtgatagtggttgacaggttgtgctgcgcgtacgtgttgggaaagaagaaggaaagaaagtgtgtctgatgaactagactggatggacagat |
216 |
Q |
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| T |
38179286 |
ggttggtgatagtggttgacaggttgtgctgcgcgtacgtgttgggaaagaagaaggaaagaaagtgtgtctgatgaactagactggatggacagat |
38179190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 321 - 499
Target Start/End: Complemental strand, 38179145 - 38178967
Alignment:
| Q |
321 |
taaagagattcataaccagaagcacggatttctgaatcacacattacaaagacatgggatttcatttaagcatcaaataaaaccccgaaaatgcatttct |
420 |
Q |
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| T |
38179145 |
taaagaggttcataaccagaagcacggatttctgaatcacacattacaaagacatgggatttcatttaagcatcaaataaaaccctgaaaatgcatttct |
38179046 |
T |
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| Q |
421 |
ctaaattcacatgatgacaacatacttgatttatagagatattacaacatgcaagagagcaaccaacatacctgatgtc |
499 |
Q |
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| T |
38179045 |
ctaaattcacatgatgacaacatacttgatttatagacatattacaacatgcaagagagcaaccaacatacctgatgtc |
38178967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 321 - 473
Target Start/End: Complemental strand, 49006997 - 49006846
Alignment:
| Q |
321 |
taaagagattcataaccagaagcacggatttctgaatcacacattacaaagacatgggatttcatttaagcatcaaataaaaccccg-aaaatgcatttc |
419 |
Q |
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| T |
49006997 |
taaagaggttcataaccagaagcacggatttgtgattcaca--ttacaaagacatgaaatttcatttaagcatcaaataaaaccccctaaaatgcagttc |
49006900 |
T |
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| Q |
420 |
tctaaattcacatgatgacaacatacttgatttatagagatattacaacatgca |
473 |
Q |
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| T |
49006899 |
tcttaattcacatgatgacaacatacttgatttctagacatattacaacatgca |
49006846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 40994464 - 40994392
Alignment:
| Q |
105 |
gagaagagagatgacggttggtgatagtggttgacaggttgtg--ctgcgcgtacgtgttgggaaagaagaag |
175 |
Q |
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| T |
40994464 |
gagaggagagacgacggtgggtgacggtggtggaaaggttgtgtgctgcgcgtgcgtgttgggaaagaagaag |
40994392 |
T |
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