View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7074_low_4 (Length: 462)
Name: NF7074_low_4
Description: NF7074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7074_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 10355473 - 10355049
Alignment:
| Q |
17 |
ggacatcaatacagtcccgattggggtcgaaccaactagtaaactggccggttctcggttcaactcgttgaactagccaattcactctggattttaaaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10355473 |
ggacatcaatacagtcccgattggggtcgaaccaactagtaaactggccggttctcggttcaactcgttgaactagccaattcactcttgattttaaaac |
10355374 |
T |
|
| Q |
117 |
attgattctaaggctttgccagactaagaggttttcaattctatagttaaaacgataatatatctccaagttaatgatatacgaagggcaaagtgacaat |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10355373 |
attgattctaaggctttgccaaactaagaggttttcaattctatagttaaaacgataatatatctccaagttaatgatatacgaagggcaaagtgacaat |
10355274 |
T |
|
| Q |
217 |
gaaggaaaatacttgagctacttacgttatgaatgttagccggatgattgagtgtatccttgggcaacatcgaagcatctgttaagacttgggacggatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10355273 |
gaaggaaaatacttgagctacttacgttatgaatgttagccggatgattgagtgtatccttgggcaacatcgaagcatctgttaagacttgggacggatt |
10355174 |
T |
|
| Q |
317 |
tgcaggagaagaatcagaagttgaggatgaagttgatgtttgtccatgaatctcattgtcaagagaagtatctccttcaacaaagaaaagagaatctatg |
416 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10355173 |
tgcagcagaagaatcagaggttgaggatgaagttgatgtttgtccatgaacctcattgtcaagagaagtatctccttcaacaaagaaaagagaatctatg |
10355074 |
T |
|
| Q |
417 |
ttcgactttggtagtgcatcgggtg |
441 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10355073 |
ttcgactttggtagtgcatcgggtg |
10355049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 35717864 - 35717772
Alignment:
| Q |
209 |
gtgacaatgaaggaaaatacttgagctacttacgttatgaatgttagccggatgattgagtgtatccttgggcaacatcgaagcatctgttaa |
301 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||| | | ||||||| |||| ||||| |||||||| |||||||| ||||| |
|
|
| T |
35717864 |
gtgacaagaaaggaaaatacttgagcaacttacgttatgaatgttatcagcatgattgcgtgtttcctttggcaacattgaagcatcggttaa |
35717772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University