View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7074_low_5 (Length: 398)

Name: NF7074_low_5
Description: NF7074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7074_low_5
NF7074_low_5
[»] chr2 (23 HSPs)
chr2 (11-383)||(10340309-10340680)
chr2 (18-383)||(10351021-10351392)
chr2 (19-333)||(9287486-9287819)
chr2 (19-338)||(10346603-10346924)
chr2 (155-302)||(10334638-10334786)
chr2 (19-138)||(10334831-10334949)
chr2 (19-134)||(8574422-8574538)
chr2 (19-111)||(10370959-10371051)
chr2 (26-145)||(9318648-9318768)
chr2 (30-143)||(9069022-9069136)
chr2 (247-333)||(9300810-9300899)
chr2 (25-144)||(9273155-9273275)
chr2 (26-157)||(9326500-9326632)
chr2 (217-296)||(9271662-9271741)
chr2 (26-175)||(9315139-9315290)
chr2 (19-175)||(9291029-9291188)
chr2 (19-145)||(9285148-9285270)
chr2 (19-123)||(9271827-9271937)
chr2 (300-383)||(10370770-10370859)
chr2 (53-156)||(7117004-7117108)
chr2 (38-157)||(9076633-9076751)
chr2 (19-76)||(11425344-11425401)
chr2 (88-145)||(9062204-9062262)
[»] chr4 (2 HSPs)
chr4 (19-338)||(26573864-26574184)
chr4 (195-270)||(560530-560602)
[»] chr6 (1 HSPs)
chr6 (217-383)||(10857004-10857173)
[»] chr3 (3 HSPs)
chr3 (24-145)||(37461496-37461618)
chr3 (218-325)||(39426803-39426913)
chr3 (218-284)||(39426149-39426215)
[»] chr5 (1 HSPs)
chr5 (218-291)||(36223662-36223736)
[»] chr7 (1 HSPs)
chr7 (241-329)||(45241679-45241770)
[»] chr8 (1 HSPs)
chr8 (19-67)||(41968359-41968408)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 10340680 - 10340309
Alignment:
Q  11 acctgtgagtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatgatgg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10340680 acctgtgagtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtggtaaaggttgaattgataatgatgg 10340581  T
Q  111 agttgcacccatttttatccctctttttgaattgtctgagatcacacacttatccctcttgtgtagaactgatgtaccactgtttttagtagagctgata 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10340580 agttgcacccatttttatccctctttttgaattgtctgagatcacacacttatccctcttgtgtagaactgatgtaccactgtttttagtagagctgata 10340481  T
Q  211 aaagctattttggcataggcatgtgaagtatgagcatcatatcaccatcaatttagatgtatatattgaaaatggtcgattaaaaaatttgtttgtgaat 310  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10340480 aaagctattttggcgtaggcatgtgaagtatgagcatcata-caccatcaatttagatgtatatattgaaaatggtcgattaaaaaatttgtttgtgaat 10340382  T
Q  311 tataaaatgaggcaagcatcttatttctgcagggaagcatgaaatttttaaatgggcttctagtgtatagact 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  10340381 tataaaatgaggcaagcatcttatttctgcagggaagcatgaaatttttaactcggcttctagtctatagact 10340309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 10351392 - 10351021
Alignment:
Q  18 agtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatgatggagttgca 117  Q
    |||||||||||||||||| |||||||| | |||||||||| ||||||||||  |||||| ||| |||   ||||||||||||||||||||||||||||||    
T  10351392 agtgaagtgcagctgaaataggatgcttctgttgtttcttgtgatggaattgctcaccttggtttgtaggaaaggttgaattgataatgatggagttgca 10351293  T
Q  118 cccatttttatccctctttttgaattgtctgagatcacacacttatccctcttgtgtagaactgatgtaccactgtttttagtagagctgataaaagcta 217  Q
    ||||||||||||||||||||||| |||||||||||   ||  || ||||||||||||| ||||| | || |||| |||||||  |||||||||||||       
T  10351292 cccatttttatccctctttttgatttgtctgagat--tactgttctccctcttgtgtaaaactgttatagcactatttttagaggagctgataaaag--- 10351198  T
Q  218 ttttggcataggcatgtgaagtatgagcatcatatcaccatcaatttagatgtatatattgaaaatggtcga-ttaaaaaatt------tgtttgtgaat 310  Q
       | |||||||||||||||| |||| |||||||||||||||||| |||||||  ||||||||||||||||| ||||||||||      ||||||||||     
T  10351197 ---ttgcataggcatgtgaagcatgatcatcatatcaccatcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttgtgaac 10351101  T
Q  311 tataaaatgaggcaagca-------tcttatttctgcagggaagcatgaaatttttaaatgggcttctagtgtatagact 383  Q
    | ||||||||| ||||||       |||||||||||||  ||||||| ||||||| ||  ||||||||||| ||||||||    
T  10351100 tctaaaatgagccaagcatcgtatttcttatttctgcatagaagcatcaaattttcaacagggcttctagtctatagact 10351021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 9287819 - 9287486
Alignment:
Q  19 gtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatg---atggagttg 115  Q
    |||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||||| |   ||||  ||||| |||||||||||||   ||| |||||    
T  9287819 gtgatgtgcagctgaaacaggatgctcaagttgtttcttgtgatggagttagtcaccttgtcttgtgggaaaggctgaattgataatgaatatgtagttg 9287720  T
Q  116 cacccatttttatccctctttttgaattgtctgagatcacacacttatccctcttgtgtagaactgatgtaccactgtttttagtagagctgataaaag- 214  Q
    |||||||||||||| ||||||||||||||||| |||||||||   ||||||||||||||| |||||||  | |||| |||||||| || ||||||||||     
T  9287719 cacccatttttatctctctttttgaattgtctaagatcacac---tatccctcttgtgtaaaactgatacatcactatttttagt-gaactgataaaagg 9287624  T
Q  215 -------------cta---ttttggcataggcatgtgaagtatgagcatcatatcaccatcaatttagatgtatatattgaaaatggtcga-ttaaaaaa 297  Q
                 |||   || |||||||| |||||||||||||||||||||||||| ||||||||||||||  | |||||||||||| || |||||| |    
T  9287623 atataataatcttctacctttatggcatagacatgtgaagtatgagcatcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaata 9287524  T
Q  298 tt--tgtttgtgaattataaaatgaggcaagcatctta 333  Q
    ||  |||||||||| | |||| ||||||||||||||||    
T  9287523 tttgtgtttgtgaactctaaagtgaggcaagcatctta 9287486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 10346924 - 10346603
Alignment:
Q  19 gtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatgatggagttgcac 118  Q
    ||||||||||||||||||| || || || |||||||||| |||||||||||||||||| ||| ||||  ||||||||||||||||||||||||  ||||     
T  10346924 gtgaagtgcagctgaaacatgaagcaccggttgtttcttgtgatggaattagtcaccttggtttgtggaaaaggttgaattgataatgatggaagtgcag 10346825  T
Q  119 ccatt-----tttatcc---------ctctttttgaattgtctgagatcacacacttatccctcttgtgtagaactgatgtaccactgtttttagtagag 204  Q
    |||||     |||||           |||||||||||||||||||||||||||  ||| || ||||||||| ||||                |||| ||     
T  10346824 ccatttagcttttataagttgtttatctctttttgaattgtctgagatcacac--ttagccttcttgtgtaaaact----------------tagtggaa 10346743  T
Q  205 ctgataaaagctattttggcataggcatgtgaagtatgagcatcatatcaccatcaatttagatgtatatattgaaaatggtcgattaaaaaatt----- 299  Q
    ||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||  |||| ||||||||||||||  ||||||         
T  10346742 ctgatcaaagctatttttgcttaggcatgtgaagcatgagcatcatatcaccatcaatttagatgtcaatatcgaaaatggtcgatttgaaaatttgtat 10346643  T
Q  300 -tgtttgtgaattataaaatgaggcaagcatcttatttct 338  Q
     |||||||||| | ||||||||||||||||||||||||||    
T  10346642 gtgtttgtgaactctaaaatgaggcaagcatcttatttct 10346603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 155 - 302
Target Start/End: Complemental strand, 10334786 - 10334638
Alignment:
Q  155 cacacttatccctcttgtgtagaactgatgtaccactgtttttagtagagctgataaaagctattttggcataggcatgtgaagtatgagcatcatatca 254  Q
    |||| |||||||||||||||| ||||| |  | || | ||| |||| ||||||||||||| |||||||| ||||||||| |||| |||||||||||||||    
T  10334786 cacagttatccctcttgtgtaaaactgttacatcattatttgtagtggagctgataaaagttattttggtataggcatgcgaagcatgagcatcatatca 10334687  T
Q  255 ccatcaatttagatgtatatattgaaaatggtcga-ttaaaaaatttgt 302  Q
    |||||||| |||||||  ||||||||||||||||| |||||||||||||    
T  10334686 ccatcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgt 10334638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 10334949 - 10334831
Alignment:
Q  19 gtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatgatggagttgcac 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||   ||||||||||||||||||| || ||  | ||    
T  10334949 gtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggtttgtaggaaaggttgaattgataatgttgtaggcgtac 10334850  T
Q  119 ccatttttatccctcttttt 138  Q
    ||| ||||||||||||||||    
T  10334849 cca-ttttatccctcttttt 10334831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 8574422 - 8574538
Alignment:
Q  19 gtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatg-atggagttgca 117  Q
    |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||  |||||||||||| | |||| |||||| ||||    
T  8574422 gtgatgtgcagctgaaacaggatgctcaagttgtttcttgtgatggaattagtcaccttggtttgtggaaaaggttgaatttacaatgaatggagctgca 8574521  T
Q  118 cccatttttatccctct 134  Q
    ||||||||| |||||||    
T  8574522 cccatttttctccctct 8574538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 10371051 - 10370959
Alignment:
Q  19 gtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatgatgga 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||   ||||||||||||||||||| ||||    
T  10371051 gtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggtttgtaggaaaggttgaattgataatgttgga 10370959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 9318768 - 9318648
Alignment:
Q  26 gcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatg-atggagttgcacccattt 124  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||  |||| ||| ||||  ||||| ||||||||||||| |||||| |||||||||||    
T  9318768 gcagctgaaacaggatactcaagttgtttcttgtgatggaattagaaaccttggtttgtgggaaaggctgaattgataatgaatggagctgcacccattt 9318669  T
Q  125 ttatccctctttttgaattgt 145  Q
    |||   ||| |||||||||||    
T  9318668 ttacatctcattttgaattgt 9318648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 9069022 - 9069136
Alignment:
Q  30 ctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatg-atggagttgcacccatttttat 128  Q
    |||||||| ||||||| ||||| ||||| ||||| |||||||||||| ||| ||||  ||||||||||||||||| | ||| || |||||||||||||||    
T  9069022 ctgaaacatgatgctcaagttgcttcttgtgatgtaattagtcaccttggtttgtgggaaaggttgaattgataaagaatgaagctgcacccatttttat 9069121  T
Q  129 ccctctttttgaatt 143  Q
      ||| |||||||||    
T  9069122 ggctcattttgaatt 9069136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 9300899 - 9300810
Alignment:
Q  247 tcatatcaccatcaatttagatgtatatattgaaaatggtcga-ttaaaaaatt--tgtttgtgaattataaaatgaggcaagcatctta 333  Q
    |||||||||  |||||||||||||  ||||||||||||||||| ||||||||||  |||||||||| | |||||||||||||||||||||    
T  9300899 tcatatcacagtcaatttagatgtcaatattgaaaatggtcgatttaaaaaatttgtgtttgtgaactctaaaatgaggcaagcatctta 9300810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 9273275 - 9273155
Alignment:
Q  25 tgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatg-atggagttgcacccatt 123  Q
    |||||||  |||| ||||||| ||||| ||||| | |||||||||||| ||| ||| || || ||||||||||||||||||| |||||| |||| |||||    
T  9273275 tgcagctttaacacgatgctcaagttgcttcttgttatggaattagtctccttggtttgcgagaaaggttgaattgataatgaatggagctgcatccatt 9273176  T
Q  124 tttatccctctttttgaattg 144  Q
    ||| || ||| ||||||||||    
T  9273175 tttgtctctcattttgaattg 9273155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 9326632 - 9326500
Alignment:
Q  26 gcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatg-atggagttgcacccattt 124  Q
    |||||||| ||||||| ||| ||||||||||| ||||||||||||||  || ||| ||||  | ||||||||| ||||||| |||||| ||||| |||||    
T  9326632 gcagctgatacaggatactcaagttgtttcttgtgatggaattagtctgcttggtttgtgcgataggttgaatggataatgaatggagctgcactcattt 9326533  T
Q  125 ttatccctctttttgaat--tgtctgagatcacac 157  Q
    ||||  ||| ||||||||  |||||||||||||||    
T  9326532 ttat--ctcattttgaattatgtctgagatcacac 9326500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 9271741 - 9271662
Alignment:
Q  217 attttggcataggcatgtgaagtatgagcatcatatcaccatcaatttagatgtatatattgaaaatggtcgattaaaaa 296  Q
    |||||||||| ||||||||||| |||| | |||| |||| ||||||||||||||  ||||||||||||||||||| ||||    
T  9271741 attttggcatcggcatgtgaagcatgaacttcatgtcacaatcaatttagatgtcaatattgaaaatggtcgatttaaaa 9271662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 175
Target Start/End: Complemental strand, 9315290 - 9315139
Alignment:
Q  26 gcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatg-atggagttgcacccattt 124  Q
    |||||||||||| ||||||| | ||||||||| ||||||||||||||  || ||| ||||  || |||||||||||||||| |||||| ||||| |||||    
T  9315290 gcagctgaaacatgatgctcaacttgtttcttgtgatggaattagtctgcttggtttgtgggaatggttgaattgataatgaatggagctgcactcattt 9315191  T
Q  125 ttatccctctttttgaat----tgtctgagatcacacacttatccctcttgtgta 175  Q
    || || ||||| ||| ||    ||||||||||  |||||||||||||||| ||||    
T  9315190 tt-tctctcttcttggattgtatgtctgagat--cacacttatccctcttttgta 9315139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 9291188 - 9291029
Alignment:
Q  19 gtgaagtgcagctgaaacaggatgctcca--gttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatg-atggagttg 115  Q
    |||| |||||||||||||||||| ||| |  ||||||| || ||||||||||||| |||| ||| ||||   ||||||||||||||| || | |||| ||    
T  9291188 gtgatgtgcagctgaaacaggattctcaaaagttgtttgttgtgatggaattagttaccttggtttgtggggaaggttgaattgatattgaaaggagctg 9291089  T
Q  116 cacccatttttatccctctttttgaat----tgtctgagatcacacacttatccctcttgtgta 175  Q
    || |||||||  || ||||||||||||    ||||||||||  |||||||||||||||||||||    
T  9291088 catccatttt--tctctctttttgaattgtatgtctgagat--cacacttatccctcttgtgta 9291029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 9285148 - 9285270
Alignment:
Q  19 gtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataa-tgatggagttgca 117  Q
    |||| |||||||||||||| ||||||| ||| ||||||| ||||||||||||||| ||     ||||  ||| ||||||||||||| | |||||| ||||    
T  9285148 gtgatgtgcagctgaaacatgatgctcaagtagtttcttgtgatggaattagtcatct-----tgtgggaaatgttgaattgataattcatggagctgca 9285242  T
Q  118 cccatttttatccctctttttgaattgt 145  Q
    | |||||||||  ||| |||||||||||    
T  9285243 cacatttttatatctcattttgaattgt 9285270  T

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Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 9271937 - 9271827
Alignment:
Q  19 gtgaagtgcagctgaaacaggatgctcca---gttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatg---atggag 112  Q
    |||| ||||||||||||||||||  || |   |||||||||| | |||||||||||| ||| ||| ||||  |||||||||||||||||||   ||||||    
T  9271937 gtgatgtgcagctgaaacaggataatcaagttgttgtttcttgtaatggaattagtctccttggtttgtgggaaaggttgaattgataatgaatatggag 9271838  T
Q  113 ttgcacccatt 123  Q
    |||||||||||    
T  9271837 ttgcacccatt 9271827  T

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Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 10370859 - 10370770
Alignment:
Q  300 tgtttgtgaattataaaatgaggcaagcat------cttatttctgcagggaagcatgaaatttttaaatgggcttctagtgtatagact 383  Q
    |||||||||| | |||||||||||||||||      ||||||||||||||||||||||||||||| ||  ||||||||| | ||||||||    
T  10370859 tgtttgtgaactctaaaatgaggcaagcatttatttcttatttctgcagggaagcatgaaattttcaacagggcttctaatctatagact 10370770  T

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Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 7117004 - 7117108
Alignment:
Q  53 ttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatga-tggagttgcacccatttttatccctctttttgaattgtctgaga 151  Q
    ||||| ||||||||||||||| || ||| |||   || ||||||||| ||||||| ||||| ||  |||||||||||| ||| |||||||||||| ||||    
T  7117004 ttcttgtgatggaattagtcatcttggtttgttggaatggttgaattaataatgaatggagctgtgcccatttttatctctcattttgaattgtccgaga 7117103  T
Q  152 tcaca 156  Q
    |||||    
T  7117104 tcaca 7117108  T

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Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 9076633 - 9076751
Alignment:
Q  38 ggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatg-atggagttgcacccatttttatccctcttt 136  Q
    |||||||  ||||||||||| ||||| |||||||||||| ||| ||    ||||||||||||||||||| |||||  ||||||||||| |||  ||| ||    
T  9076633 ggatgctagagttgtttctt-tgatgtaattagtcaccttggtttgcaggaaaggttgaattgataatgaatggaactgcacccatttctatggctcatt 9076731  T
Q  137 ttgaattgtctgagatcacac 157  Q
    ||||||||| |||||||||||    
T  9076732 ttgaattgt-tgagatcacac 9076751  T

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Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 11425344 - 11425401
Alignment:
Q  19 gtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacct 76  Q
    |||| |||||||||||||||||| ||| ||||||||||| ||| ||||||| ||||||    
T  11425344 gtgatgtgcagctgaaacaggatactcgagttgtttcttgtgaaggaattaatcacct 11425401  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 9062204 - 9062262
Alignment:
Q  88 aaaggttgaattgataatg-atggagttgcacccatttttatccctctttttgaattgt 145  Q
    ||||||||||||||||||| |||| | |||||||||||||||| ||| |||||| ||||    
T  9062204 aaaggttgaattgataatgaatggggctgcacccatttttatctctcattttgagttgt 9062262  T

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Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 26574184 - 26573864
Alignment:
Q  19 gtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatgatggagttgcac 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||         ||||||||||| ||||||||||| |||||    
T  26574184 gtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggtt--------aggttgaattggtaatgatggaggtgcac 26574093  T
Q  119 ccatttttatccctctttttgaattgtctgagatcacacacttatccctctt------gtgtagaactgatgtaccactgtttttagtagagctgataaa 212  Q
    ||||||||||||||||||||||||| ||||||||||||   |||||||||||      ||||| ||||||| ||  ||| |||||| | |||||||||||    
T  26574092 ccatttttatccctctttttgaattttctgagatcacag--ttatccctcttatgtgtgtgtaaaactgatatattactatttttaatggagctgataaa 26573995  T
Q  213 agctattttggcataggcatgtgaagtatgagcatcatatcaccatcaatttagatgtatatattgaaaatggtcga-ttaaaaaatt----tgtttgtg 307  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||  ||||||||| ||| | | ||||||||||    ||||||||    
T  26573994 agctattttggcataggcatgtgaagcttgagcatcatatcaccatcaatgtagatgtcaatattgaaattgggcaatttaaaaaatttgtatgtttgtg 26573895  T
Q  308 aattataaaatgaggcaagcatcttatttct 338  Q
    || | ||||||||||||||||||||||||||    
T  26573894 aactctaaaatgaggcaagcatcttatttct 26573864  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 560602 - 560530
Alignment:
Q  195 tttagtagagctgataaaagctattttggcataggcatgtgaagtatgagcatcatatcaccatcaatttagatgt 270  Q
    |||||||||  |||||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||||    
T  560602 tttagtagaaatgataaaagctattttggcataggcatgt---gcatgagcatcatatcaccatcaatttagatgt 560530  T

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Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 383
Target Start/End: Original strand, 10857004 - 10857173
Alignment:
Q  217 attttggcataggcatgtgaagtatgagcatcatatcaccatcaatttagatgtatatattgaaaatggtcga-ttaaaaaatt--tgtttgtgaattat 313  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||| || |||||||| ||||||||||  |||||||||| | |    
T  10857004 attttggcataggcatgtaaagcatgagcatcatatcaccttcaatttagatgtaaatattcaatatggtcgatttaaaaaatttgtgtttgtgaactct 10857103  T
Q  314 aaaatgaggcaagcatcttatttctgcagggaagcatgaaatttttaaatgggcttctagtgtatagact 383  Q
    |||||||||||||| || ||||||||||||||| || |||||||| ||  | ||||||||| ||||||||    
T  10857104 aaaatgaggcaagcgtcgtatttctgcagggaaacaagaaattttcaacagagcttctagtctatagact 10857173  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 37461618 - 37461496
Alignment:
Q  24 gtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtgataaaggttgaattgataatg-atggagttgcacccat 122  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||||||| ||| ||| ||||   |||||||||||||||||| |||||| ||||| |||    
T  37461618 gtgcagctgaaacagggtgctcaagttgtttcttgtgatggaattagtctccttggtttgtgggtaaggttgaattgataatgaatggagctgcacgcat 37461519  T
Q  123 ttttatccctctttttgaattgt 145  Q
    || |||  ||| |||||||||||    
T  37461518 ttgtatttctcattttgaattgt 37461496  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 325
Target Start/End: Complemental strand, 39426913 - 39426803
Alignment:
Q  218 ttttggcataggcatgtgaagtatgagcatcatatcaccatcaatttagatgtatatattgaaaatggtcgat-taaaaaa--tttgtttgtgaattata 314  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||| ||||  |||||||||||||||||| || ||||  | |||||||||| | ||    
T  39426913 ttttgacataggcatgtgaagcttgagcatcatatcaccatcaatttaaatgtcaatattgaaaatggtcgatctagaaaatctgtgtttgtgaactcta 39426814  T
Q  315 aaatgaggcaa 325  Q
    |||||||||||    
T  39426813 aaatgaggcaa 39426803  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 39426215 - 39426149
Alignment:
Q  218 ttttggcataggcatgtgaagtatgagcatcatatcaccatcaatttagatgtatatattgaaaatg 284  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||  ||||||||||||    
T  39426215 ttttggcataggcatgtgaagcatgagcatcatatcacagtcaatttagatgtccatattgaaaatg 39426149  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 36223736 - 36223662
Alignment:
Q  218 ttttggcataggcatgtgaagtatgagcatc-atatcaccatcaatttagatgtatatattgaaaatggtcgatt 291  Q
    ||||||| ||||||||| ||| ||||||||  ||||||||||||||||||||||  ||||||||||| |||||||    
T  36223736 ttttggcttaggcatgttaagcatgagcatatatatcaccatcaatttagatgtcaatattgaaaattgtcgatt 36223662  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 45241770 - 45241679
Alignment:
Q  241 tgagcatcatatcaccatcaatttagatgtatatattgaaaatggtcgattaaaaa---atttgtttgtgaattataaaatgaggcaagcat 329  Q
    ||||||||||||||||||||||||||||||  |||||||| ||| | |||| | ||    | |||||||||| |||||||||||||||||||    
T  45241770 tgagcatcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctttgtgtttgtgaactataaaatgaggcaagcat 45241679  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 41968359 - 41968408
Alignment:
Q  19 gtgaagtgcagctgaaac-aggatgctccagttgtttcttatgatggaat 67  Q
    |||| ||||||||||||| ||||||||| ||||||||||| |||||||||    
T  41968359 gtgatgtgcagctgaaaccaggatgctcaagttgtttcttctgatggaat 41968408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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