View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7074_low_8 (Length: 280)

Name: NF7074_low_8
Description: NF7074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7074_low_8
NF7074_low_8
[»] chr1 (3 HSPs)
chr1 (12-224)||(34422312-34422524)
chr1 (12-114)||(34419054-34419156)
chr1 (217-262)||(34422258-34422304)
[»] chr6 (4 HSPs)
chr6 (12-126)||(24345770-24345884)
chr6 (217-258)||(264303-264344)
chr6 (217-258)||(9559638-9559679)
chr6 (222-258)||(29274326-29274362)
[»] chr7 (2 HSPs)
chr7 (217-258)||(33673010-33673051)
chr7 (217-258)||(42656447-42656488)
[»] chr5 (9 HSPs)
chr5 (217-258)||(1465116-1465157)
chr5 (217-258)||(706395-706436)
chr5 (217-258)||(4014521-4014562)
chr5 (217-258)||(7674580-7674621)
chr5 (217-258)||(9202845-9202886)
chr5 (217-258)||(11714963-11715004)
chr5 (217-258)||(20982232-20982273)
chr5 (218-258)||(37112355-37112395)
chr5 (213-245)||(40995024-40995056)
[»] chr4 (5 HSPs)
chr4 (217-258)||(7601691-7601732)
chr4 (213-258)||(24160918-24160963)
chr4 (217-258)||(49004067-49004108)
chr4 (217-261)||(4191671-4191715)
chr4 (214-258)||(4798656-4798700)
[»] chr2 (5 HSPs)
chr2 (213-261)||(41033044-41033092)
chr2 (213-258)||(656874-656919)
chr2 (217-258)||(17952798-17952839)
chr2 (217-250)||(40682478-40682511)
chr2 (222-258)||(32098405-32098441)
[»] chr8 (4 HSPs)
chr8 (217-258)||(10114422-10114463)
chr8 (217-258)||(14280498-14280539)
chr8 (217-258)||(26215428-26215469)
chr8 (217-258)||(43718027-43718068)
[»] chr3 (2 HSPs)
chr3 (221-258)||(34638062-34638099)
chr3 (217-257)||(54194451-54194491)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 34422524 - 34422312
Alignment:
Q  12 aacctgtggaaattttcagaacctccaatggcaaccaaacaataggcattggtaagttttgagaagactccaacttcacaagaattctcaaactgaagtc 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34422524 aacctgtagaaattttcagaacctccaatggcaaccaaacaataggcattggtaagttttgagaagactccaacttcacaagaattctcaaactgaagtc 34422425  T
Q  112 ctggacaaaaccaattatcgcgagtcaaaatcaatcccttccacgaaagatcacacagcaatatactaatttttaaataacaaccgatatgaacgaattc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34422424 ctggacaaaaccaattatcgcgagtcaaaatcaatcccttccacgaaagatcacatagcaatatactaatttttaaataacaaccgatatgaacgaattc 34422325  T
Q  212 ctaattaagcgct 224  Q
    |||||||||||||    
T  34422324 ctaattaagcgct 34422312  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 34419156 - 34419054
Alignment:
Q  12 aacctgtggaaattttcagaacctccaatggcaaccaaacaataggcattggtaagttttgagaagactccaacttcacaagaattctcaaactgaagtc 111  Q
    ||||||| ||||||| ||||||||||||| |||  ||||||||| ||||||||||||||||||||  |||||| |||||||||||||||| | ||||| |    
T  34419156 aacctgtagaaatttgcagaacctccaatagcagtcaaacaatacgcattggtaagttttgagaaagctccaatttcacaagaattctcatattgaagcc 34419057  T
Q  112 ctg 114  Q
    |||    
T  34419056 ctg 34419054  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 34422304 - 34422258
Alignment:
Q  217 taagcgcttatatataa-gctatttctatagcaaaggataaaaatac 262  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  34422304 taagcgcttatatataaagctatttctatagcaaaggataaaaatac 34422258  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 24345884 - 24345770
Alignment:
Q  12 aacctgtggaaattttcagaacctccaatggcaaccaaacaataggcattggtaagttttgagaagactccaacttcacaagaattctcaaactgaagtc 111  Q
    ||||||| |||  ||||||| |||||||||||||||| ||||||| ||||||||||||| ||||| |||||||  ||||||  |||||||||||||||||    
T  24345884 aacctgtagaagctttcagagcctccaatggcaaccatacaatagccattggtaagtttagagaacactccaatatcacaattattctcaaactgaagtc 24345785  T
Q  112 ctggacaaaaccaat 126  Q
    ||| | |||||||||    
T  24345784 ctgcagaaaaccaat 24345770  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 264303 - 264344
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    |||| |||||||||||||||||||||| |||||| |||||||    
T  264303 taagtgcttatatataagctatttctaaagcaaaagataaaa 264344  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 9559679 - 9559638
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||||||| |||||| ||||||||||||||| |||||||    
T  9559679 taagcgcttatgtataagttatttctatagcaaaagataaaa 9559638  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 29274362 - 29274326
Alignment:
Q  222 gcttatatataagctatttctatagcaaaggataaaa 258  Q
    |||||| |||||||||||||||||||||| |||||||    
T  29274362 gcttatgtataagctatttctatagcaaaagataaaa 29274326  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 33673010 - 33673051
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  33673010 taagcgcttatgtataagctacttctatagcaaaggataaaa 33673051  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 42656447 - 42656488
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||| ||||||||||||||||||||||| |||| |||||||    
T  42656447 taagcacttatatataagctatttctataacaaaagataaaa 42656488  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 1465157 - 1465116
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  1465157 taagcgcttatgtataagctatttctatagcataggataaaa 1465116  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 706395 - 706436
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||||||| |||||||||||||||||| ||| |||||||    
T  706395 taagcgcttatgtataagctatttctatagtaaaagataaaa 706436  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 4014562 - 4014521
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||| ||| |||||||||||||||||||||| |||||||    
T  4014562 taagcgcctatgtataagctatttctatagcaaaagataaaa 4014521  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 7674580 - 7674621
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||| ||||||||||||||||||||||| |||| |||||||    
T  7674580 taagcacttatatataagctatttctataccaaaagataaaa 7674621  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 9202886 - 9202845
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    |||| ||||||||||||||||||||| ||||||| |||||||    
T  9202886 taagtgcttatatataagctatttctgtagcaaaagataaaa 9202845  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 11715004 - 11714963
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||||| ||||||||||||||||||| |||| |||||||    
T  11715004 taagcgcttgtatataagctatttctataacaaaagataaaa 11714963  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 20982273 - 20982232
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    |||| |||||| ||||||||||||||||| ||||||||||||    
T  20982273 taagtgcttatgtataagctatttctataacaaaggataaaa 20982232  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 37112395 - 37112355
Alignment:
Q  218 aagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    |||||||||| ||||||||||||||| |||||| |||||||    
T  37112395 aagcgcttatgtataagctatttctacagcaaaagataaaa 37112355  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 40995056 - 40995024
Alignment:
Q  213 taattaagcgcttatatataagctatttctata 245  Q
    |||||||||||||||| ||||||||||||||||    
T  40995056 taattaagcgcttatagataagctatttctata 40995024  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 7601691 - 7601732
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  7601691 taagcgcttatgtataagctattcctatagcaaaggataaaa 7601732  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 24160918 - 24160963
Alignment:
Q  213 taattaagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    |||||||  |||||| ||||||||||||||||| ||||||||||||    
T  24160918 taattaactgcttatgtataagctatttctataacaaaggataaaa 24160963  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 49004108 - 49004067
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||||||| ||||||| |||||||||||||| |||||||    
T  49004108 taagcgcttatgtataagcaatttctatagcaaaagataaaa 49004067  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 4191671 - 4191715
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaaata 261  Q
    |||| |||||| ||||||||||||||||| |||| ||||||||||    
T  4191671 taagtgcttatgtataagctatttctataacaaaagataaaaata 4191715  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 4798700 - 4798656
Alignment:
Q  214 aattaagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||| |||||| ||||||||||||||||| |||| |||||||    
T  4798700 aattaagtgcttatgtataagctatttctatatcaaaagataaaa 4798656  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 41033092 - 41033044
Alignment:
Q  213 taattaagcgcttatatataagctatttctatagcaaaggataaaaata 261  Q
    |||||||| |||||| ||||||||||||||||| |||| ||||||||||    
T  41033092 taattaagtgcttatgtataagctatttctataacaaaagataaaaata 41033044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 656919 - 656874
Alignment:
Q  213 taattaagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    |||||||||||||  |||||||||||||||||| |||| |||||||    
T  656919 taattaagcgcttgcatataagctatttctataacaaaagataaaa 656874  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 17952839 - 17952798
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    |||| |||||||||||||||||||||||| |||| |||||||    
T  17952839 taagagcttatatataagctatttctataacaaaagataaaa 17952798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 40682511 - 40682478
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaa 250  Q
    ||||||||||| ||||||||||||||||||||||    
T  40682511 taagcgcttatgtataagctatttctatagcaaa 40682478  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 32098441 - 32098405
Alignment:
Q  222 gcttatatataagctatttctatagcaaaggataaaa 258  Q
    |||||||||||||||||||||||| |||| |||||||    
T  32098441 gcttatatataagctatttctataacaaaagataaaa 32098405  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 10114422 - 10114463
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    |||| |||||| |||||||||||||||||||||| |||||||    
T  10114422 taagtgcttatgtataagctatttctatagcaaaagataaaa 10114463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 14280539 - 14280498
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||||||| ||||| |||||||||||||||| |||||||    
T  14280539 taagcgcttatgtataacctatttctatagcaaaagataaaa 14280498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 26215428 - 26215469
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||||||| ||||||||||||||||| |||| |||||||    
T  26215428 taagcgcttatgtataagctatttctataacaaaagataaaa 26215469  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 43718068 - 43718027
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaaa 258  Q
    ||||||||||| |||||||||||||||| ||||| |||||||    
T  43718068 taagcgcttatctataagctatttctatcgcaaaagataaaa 43718027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 34638099 - 34638062
Alignment:
Q  221 cgcttatatataagctatttctatagcaaaggataaaa 258  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  34638099 cgcttatatataagctatttctatagaaaaagataaaa 34638062  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 54194451 - 54194491
Alignment:
Q  217 taagcgcttatatataagctatttctatagcaaaggataaa 257  Q
    ||||||||||| ||||||||||||||||| ||||| |||||    
T  54194451 taagcgcttatgtataagctatttctataacaaagtataaa 54194491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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