View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7074_low_9 (Length: 252)
Name: NF7074_low_9
Description: NF7074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7074_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 29285755 - 29285980
Alignment:
| Q |
11 |
aagaatgtgttaaaaagagcgtgatagaaagtatgtctacaaatacaatccacatatcgttaccataattgaacaaattatttatcatatcacaagccaa |
110 |
Q |
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| T |
29285755 |
aagagtgtgttaaaaagagcgtgatagaaagtatgtctacaaatacaatccacatatcgttaccataattgaacaaattatttatcatatcacaagccaa |
29285854 |
T |
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| Q |
111 |
atannnnnnnnattatgattaggaaacccataaataatcgtagctctccaagtgccaaaatttattaagataagaaacatagaaatcaatgagattatca |
210 |
Q |
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| T |
29285855 |
atattttttttattatgattaggaaacccataaataatcgtagctctccaagtgccaaaatttattaagataagaaacatagaaatcaatgagattatca |
29285954 |
T |
|
| Q |
211 |
ttagatttcataatactcacatttac |
236 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29285955 |
ttagatttcataatactcacatttac |
29285980 |
T |
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