View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7075_high_10 (Length: 258)
Name: NF7075_high_10
Description: NF7075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7075_high_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3014322 - 3014065
Alignment:
| Q |
1 |
tcaaagctccaaaccttggcttttaagagcattaaacagtagtctagggaaaaggtgcatatgacagctttttcatgataatctggctttttaaatcgtt |
100 |
Q |
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| T |
3014322 |
tcaaagctctaacccttggcttttaagagcattaaacagtagtctagggaaaaggtgcatatgacagctttttcatgataatttggctttttaaatcgtt |
3014223 |
T |
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| Q |
101 |
agatctttatttcgactcttgaaaattaccttagtaatgttgttctctcatttgtttatttgatttggcttaaatttgattaggttttggtttggaggca |
200 |
Q |
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| T |
3014222 |
agatctttatttcgactcttgaaaattaccttagtaatgttgttctctcatttgtttatttgacttggcttaaatttggttaggttttggtttggaggca |
3014123 |
T |
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| Q |
201 |
tctttaaggtgagtcctcattttttatctttaacttgattgcctcaaatgaattagta |
258 |
Q |
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| T |
3014122 |
tctttaaggtgagtcctcattttttatctttaacttgattgcctcaaatgaattagta |
3014065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 3041951 - 3041736
Alignment:
| Q |
1 |
tcaaagctccaaaccttggcttttaagagcattaaacagtagtctagggaaaaggtgcatatg-acagctttttcatgataatctggctt---tttaaat |
96 |
Q |
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||||||||| || ||||||||||||||||||||||||| || |||||||||||||| ||| | | |||||| ||||| | |||||| ||||||| |
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| T |
3041951 |
tcaaagctctaacccttggcttttaagagcattaaacaacagcttagggaaaaggtgcttattcataattttttcttgatattttggcttctctttaaat |
3041852 |
T |
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| Q |
97 |
cgttagatctttatttcgactcttgaaaattaccttagtaatgttgttctctcatttgtttatttgatttggcttaaatttgattaggttttggtttgga |
196 |
Q |
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|||||||| ||| || | |||| || || |||||||||||| |||||||||| | |||||||||||||| ||| |||| ||||||||||||||||| |
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| T |
3041851 |
tgttagatcattagttggtttcttcaagatgaccttagtaatgctgttctctcaaat-tttatttgatttggtttatattttgttaggttttggtttgga |
3041753 |
T |
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| Q |
197 |
ggcatctttaaggtgag |
213 |
Q |
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||||||| ||||||||| |
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| T |
3041752 |
ggcatctataaggtgag |
3041736 |
T |
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