View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7075_low_1 (Length: 620)
Name: NF7075_low_1
Description: NF7075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7075_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 14 - 605
Target Start/End: Original strand, 10575962 - 10576553
Alignment:
| Q |
14 |
gacatcatgaactattgtaagctattaagttctgtgttgaatattgcatctgtgattaacataatcaccataaattatgttaatcagaacgtcttgtcct |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10575962 |
gacatcatgaactattgtacgctattaagttctgtgttcaatattgcatctgtgattaacataatcaccataaattatgttaatcagaacttcttgtccc |
10576061 |
T |
|
| Q |
114 |
aacgaagacccacatttttatagtgggtagctcttgccatgctatcttcatcataaattttgcatttattcacaaggatagaaaaacattagcatctcct |
213 |
Q |
| |
|
|| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10576062 |
aaagaagacccacattcttatagtgagtagctcttgccatgctatcttcatcataaattttgcatttattcacaaggatagaaaaacattagcatctcct |
10576161 |
T |
|
| Q |
214 |
ggtggccaatgaattgcatatgcaccattatagtgggacagaacatagactatttctcaaatttgactgcattgtcagctacgaacgtattcccttgctt |
313 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10576162 |
ggtggccaatgaattgcatatacaccattatagtgggacagaacatagactatttctcaaatttgactgcattgtcagctacgaacgtattcccttgctt |
10576261 |
T |
|
| Q |
314 |
cagttcaaagacttccacttctacagcctctgcttccatattccggcgag-nnnnnnnccaccaatgttcaacctcttatgacaaaatgaaagcaccaaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10576262 |
cagttcaaagacttccacttctacagcctctgcttccatattccggcgagttttttttccaccaatgttcaacctcttctgacaaaatgaaagcaccaaa |
10576361 |
T |
|
| Q |
413 |
ggaataacagaagatcttagtgtacaaaatgcgcaaaaggtgcagaatgttcaaaattttgaaggaaaaggaataacagaggagaggagaaaagagttct |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10576362 |
ggaataacagaagatcttagtgtacaaaatgcgcaaaaggtgcagaatgttcagaattttgaaggaaaaggaataacagaggagaggagaaaagagttct |
10576461 |
T |
|
| Q |
513 |
tgtcacaattcatgcatcctcatatatgcacccaattcaagtcacaaagcctctcaattgagagttagttagcctctggggaccctttgatgt |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10576462 |
tgtcacaattcatgcatcctcatatatgcacccaattcaagtcacaaagcctctcaattgagagttagttagcctct-gggaccctttgatgt |
10576553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University