View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7075_low_15 (Length: 240)
Name: NF7075_low_15
Description: NF7075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7075_low_15 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: scaffold0370 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13457 - 13680
Alignment:
| Q |
1 |
ttggatttttagacgattttaagttcggtccacagtggcccacaaaacatgcatgtagaacttgatcttatatgttactttttcaattccagattctcaa |
100 |
Q |
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| T |
13457 |
ttggatttttagacgattttaagttcggtccacagcggcccaccaaacatgcatgtagaacttgatcttatatgttactttttcaattccagaatctcaa |
13556 |
T |
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| Q |
101 |
ctattacaagtattgttcacttataaataaagtacatcaactgagtgaagaaaaagatgtaacagtccttgatgagatgtcaagttcagaggttggtaat |
200 |
Q |
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| T |
13557 |
ctattacaagtattgttcacttataaataaagtacatcaactgagtgaagaaaaagatgtaacactccttgatgagatgtcaagttcagaggttggtaat |
13656 |
T |
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| Q |
201 |
tgtattagttacatggtatttatt |
224 |
Q |
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| T |
13657 |
tgtattagttacatggtatttatt |
13680 |
T |
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Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 76 - 202
Target Start/End: Original strand, 38692058 - 38692185
Alignment:
| Q |
76 |
tactttttcaattccagattctcaactattacaagtattgttcacttataaataaagtacatcaactgagtgaag-aaaaagatgtaacagtccttgatg |
174 |
Q |
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| T |
38692058 |
tactttttcaattgtagattctccattattacaagtattgttcactaataaataaagtacatcaactgagtgaagaaaaaagatgtaagagtccttgatg |
38692157 |
T |
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| Q |
175 |
agatgtcaagttcagaggttggtaattg |
202 |
Q |
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| T |
38692158 |
agatgtcaagttcagaggctggtaattg |
38692185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 38634327 - 38634445
Alignment:
| Q |
80 |
ttttcaattccagattctcaactattacaagtattgttcacttataaataaagtacatcaactgagtgaagaaaaagatgtaacagtccttgatgagatg |
179 |
Q |
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| T |
38634327 |
ttttctatttcagattctccactattaccagcattgttcacttataaataaagtccatcagctggcagaagaaaaagatgtatcaaccctagatgagatg |
38634426 |
T |
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| Q |
180 |
tcaagttcagaggttggta |
198 |
Q |
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| T |
38634427 |
tcaaattcagaggttggta |
38634445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 38638613 - 38638699
Alignment:
| Q |
112 |
attgttcacttataaataaagtacatcaactgagtgaagaaaaagatgtaacagtccttgatgagatgtcaagttcagaggttggta |
198 |
Q |
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| T |
38638613 |
attgttcgctaataaataaagtgcatcagttggctaaagaaaaagatatagcagcccttgataagatgtcacgttcagaggttggta |
38638699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 38691104 - 38691145
Alignment:
| Q |
65 |
atcttatatgttactttttcaattccagattctcaactatta |
106 |
Q |
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| T |
38691104 |
atcttatatgttaatttttcaactgcagattctcaactatta |
38691145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 40760134 - 40760051
Alignment:
| Q |
78 |
ctttttcaattccagattctcaactattacaagtattgttcacttataaataaagtacatcaactgagtgaagaaaaagatgta |
161 |
Q |
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| T |
40760134 |
ctttttcagtttcagattctccactattaccagtattgttcacatacaaatgaagttcaacagctgattgacgaaaaagatgta |
40760051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 40766998 - 40766914
Alignment:
| Q |
109 |
agtattgttcacttataaataaagtacatcaactgagtgaagaaaaagatgtaacagtccttgatgagatgtcaagttcagaggt |
193 |
Q |
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| T |
40766998 |
agtattcttcacttatagacaaagtccagcagctggttgaagaaaaagatgtagcatcccttgatgagatttcttgttcagaggt |
40766914 |
T |
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