View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7075_low_3 (Length: 480)
Name: NF7075_low_3
Description: NF7075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7075_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 52728161 - 52727893
Alignment:
| Q |
1 |
aatattatcgttgaatttgacccatgaacatcaaaataataacataaatcaagtgacttctgaaatagtcgcgagtataaattgttatatgactgttaaa |
100 |
Q |
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| T |
52728161 |
aatattatcattgaatttgacccatgaacatcaaaataataacataaatcaagtgacttctgaaatagtcgcgagtataaattgttatatgactgttaaa |
52728062 |
T |
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| Q |
101 |
actttcaaacttgaccgtttaagtaatggttacatgtcaagatttacccctcattcagaacttcatagtatcatcacatccaatgttgaaatactctttc |
200 |
Q |
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| T |
52728061 |
actttcaaacttgaccgtttaagtaatggttacatgtcaagatttacccctcattcagaacttcatagtatcatcacatccaatgttgaaatactctttc |
52727962 |
T |
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| Q |
201 |
agaaagataaaactttcaatcttgatgataattaagcatggtcacatgtcaagatttacccctcataaa |
269 |
Q |
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| T |
52727961 |
agaaagataaaactttcaatcttgacgataattaagcatggtcacatgtcaagatttacccctcataaa |
52727893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 315 - 458
Target Start/End: Complemental strand, 52727893 - 52727750
Alignment:
| Q |
315 |
aggagggttcgttatggctgaatctttaacaatgatctaaacaactcatgcaagttccagctacaattatctttcaattaaactgtaagaagctagcgaa |
414 |
Q |
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| T |
52727893 |
aggagggttcgttatggctgaatctttaacaatgatctaaacaactcatgcaagttccagctacaattatctttcaattaaactgtaagaagctagcgaa |
52727794 |
T |
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| Q |
415 |
cattcaatagtgcaagatctgcaaaatagggttagcaggttcgt |
458 |
Q |
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| T |
52727793 |
cattcaatagtggaagatctgcaaaatagggttagcaggttcgt |
52727750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 52728036 - 52727970
Alignment:
| Q |
238 |
atggtcacatgtcaagatttacccctcataaaaaccttaatagtatcatcacatctaatgtggaaat |
304 |
Q |
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| T |
52728036 |
atggttacatgtcaagatttacccctcattcagaacttcatagtatcatcacatccaatgttgaaat |
52727970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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