View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7075_low_4 (Length: 427)
Name: NF7075_low_4
Description: NF7075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7075_low_4 |
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| [»] scaffold0204 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Original strand, 37071838 - 37072244
Alignment:
| Q |
7 |
gcaaggaaatatccatcttggcttcctgttcttggtgctggaactcttccatttggaaccctcttcattgagcttttctttatcctctctagcatctggc |
106 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071838 |
gcaaggaaatatccatcttggcttcttgttcttggtgctggaactcttccatttggaaccctcttcattgagcttttctttatcctctctagcatctggc |
37071937 |
T |
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| Q |
107 |
tcgggaggttctattacgtgtttggtttcctgttggttgttcttctattgctgattgttgtttgtgccgaggtgtcagtggtgcttacatatatgcatct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37071938 |
tcgggaggttctattacgtgtttggtttcctgttggttgttcttctattgctgattgttgtttgtgccgaggtgtcggtggtgcttacatatatgcatct |
37072037 |
T |
|
| Q |
207 |
gtgtgtggaagattggcgatggtggtggaaggcattctatgcttcaggttctgttgctctttatgtattcttgtactccattaactacttggttttcgac |
306 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37072038 |
gtgtgtggaagattggcggtggtggtggaaggcattctatgcttccggttctgttgctctttatgtattcttgtactccattaactacttggttttcgac |
37072137 |
T |
|
| Q |
307 |
ctgcagagtttgagtggacctgtgtcagctaccctttaccttggctattcactactcatggcaattgcaatcatgttgtcaactggcaccattggcttcc |
406 |
Q |
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| T |
37072138 |
ctgcagagtttgagtggacctgtgtcagctaccctttaccttggctattcactactcatggcaattgcaatcatgttgtcaactggcaccattggcttcc |
37072237 |
T |
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| Q |
407 |
tgatgtc |
413 |
Q |
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| T |
37072238 |
ttatgtc |
37072244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 43218926 - 43218532
Alignment:
| Q |
13 |
aaatatccatcttggcttcctgttcttggtgctggaactcttccatttggaaccctcttcattgagcttttctttatcctctctagcatctggctcggga |
112 |
Q |
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||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||| ||||| |||||||| |||| |
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| T |
43218926 |
aaatatccatcatggcttcttgttcttggtgccggaactcttccatttggaaccctttttatcgagcttttctttatcctttctagtatctggcttggga |
43218827 |
T |
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| Q |
113 |
ggttctattacgtgtttggtttcctgttggttgttcttctattgctgattgttgtttgtgccgaggtgtcagtggtgcttacatatatgcatctgtgtgt |
212 |
Q |
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| T |
43218826 |
ggttctattatgtttttggttttctgctggttgttcttttactgttgactattgtctgtgctgaagtgtcggtggtcctcacatatatgcatctctgtgt |
43218727 |
T |
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| Q |
213 |
ggaagattggcgatggtggtggaaggcattctatgcttcaggttctgttgctctttatgtattcttgtactccattaactacttggttttcgacctgcag |
312 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||| ||||| |
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| T |
43218726 |
cgaagattggcggtggtggtggaaggcattctatgcatcaggctctgttgctctttatgtctttttgtactccattaactacttggtttttgacttgcag |
43218627 |
T |
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| Q |
313 |
agtttgagtggacctgtgtcagctaccctttaccttggctattcactactcatggcaattgcaatcatgttgtcaactggcaccattggcttcct |
407 |
Q |
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||||||||||||||||| || |||| ||||| | |||||||| || ||||||||||||||||||||| | |||||||| |||||||| ||||| |
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| T |
43218626 |
agtttgagtggacctgtctctgctatactttatatcggctattcgctgctcatggcaattgcaatcatgctttcaactggaaccattggtttcct |
43218532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 942 - 998
Alignment:
| Q |
34 |
gttcttggtgctggaactcttccatttggaaccctcttcattgagcttttctttatc |
90 |
Q |
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| T |
942 |
gttctaggtgctggcacccttccctttggaacccttttcattgagctcttctttatc |
998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 1107 - 1171
Alignment:
| Q |
199 |
atgcatctgtgtgtggaagattggcgatggtggtggaaggcattctatgcttcaggttctgttgc |
263 |
Q |
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||||| || |||||||| |||||| ||||||||||||| |||||| ||| || ||||||||||| |
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| T |
1107 |
atgcacctctgtgtggaggattggagatggtggtggaaatcattctttgcctctggttctgttgc |
1171 |
T |
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