View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7075_low_6 (Length: 389)
Name: NF7075_low_6
Description: NF7075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7075_low_6 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: scaffold0370 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 13448 - 13071
Alignment:
| Q |
1 |
aatctcagtctcttaaagtagaaattcatgatctcgttgttgtaacatctaattaagacaatgacctgattggtgcaagtttttcaaagacagagaaaga |
100 |
Q |
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| T |
13448 |
aatctcagtctcttaaagtagaaattcatgatctcgttgttgtaacatctaattaagacaatgacctgattggtgcaagtttttcaaagacaaagaaaga |
13349 |
T |
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| Q |
101 |
aaacatgtccctcaaaatttaactcaattttttccccacattttatcaaactgacaccagttaaatcgccgtctcaatcgtgaaaacggaacggatcatg |
200 |
Q |
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| T |
13348 |
aaacatgtccctcaaaatttaactcaatttttttcccacattttatcaaactgacaccagttaaatcgccgtctcaatcgtgaaaacggagcggatcatg |
13249 |
T |
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| Q |
201 |
gacttctacttctgagtgcaaatgcaattatattaaatgcatagattgtagtttttaacatacattctcatgatacaactcttccaatttcaaaatcctt |
300 |
Q |
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| T |
13248 |
gacttctacttctgagtgcaaatgcaattatattaaatgcatagattgtagtttttaacatacattctcatgatacaactctttcaatttcaaaatcctt |
13149 |
T |
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| Q |
301 |
tgctttgcttcatactttttcttatacttctgattcaatttttccctcaatgaatataattttccgtttttggcttct |
378 |
Q |
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| T |
13148 |
tgctttgcttcatactttttgttatacttctgattcaatttttctctcaatgaatataattttccgtttatggcttct |
13071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 38692007 - 38691865
Alignment:
| Q |
56 |
agacaatgacctgattggtgcaagtttttcaaagac-agagaaagaaaacatgtccctcaaaatttaactcaattttttccccacattttatcaaactga |
154 |
Q |
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| T |
38692007 |
agacaatgacctgattggtacaagtttttcaaagactagagaatacaaatatgtccctcaaaatttaactaatttgttttccctcgttcttttaaactga |
38691908 |
T |
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| Q |
155 |
caccagttaaatcgccgtctcaatcgtgaaaacggaacggatc |
197 |
Q |
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| T |
38691907 |
caccaattaaatcaccgtctcaatcgtgaaaacgaagcggatc |
38691865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 378
Target Start/End: Complemental strand, 38638103 - 38638010
Alignment:
| Q |
285 |
caatttcaaaatcctttgctttgcttcatactttttcttatacttctgattcaatttttccctcaatgaatataattttccgtttttggcttct |
378 |
Q |
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| T |
38638103 |
caatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataattctctgtttatagcttct |
38638010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 38690725 - 38690647
Alignment:
| Q |
285 |
caatttcaaaatcctttgctttgcttcatactttttcttatacttctgattcaatttttccctcaatgaatataatttt |
363 |
Q |
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|||||| ||||||||||| | |||||||| ||| ||||||| ||||| |||||||| | ||||| |||||||||||| |
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| T |
38690725 |
caatttgaaaatcctttgatatgcttcatccttattcttatgcttctctatcaattttgcactcaaagaatataatttt |
38690647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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