View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7075_low_7 (Length: 382)

Name: NF7075_low_7
Description: NF7075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7075_low_7
NF7075_low_7
[»] chr7 (5 HSPs)
chr7 (13-372)||(45341211-45341568)
chr7 (149-289)||(4548267-4548409)
chr7 (120-304)||(6011403-6011586)
chr7 (228-291)||(11622442-11622506)
chr7 (148-236)||(19432388-19432474)
[»] chr3 (4 HSPs)
chr3 (84-294)||(19800545-19800754)
chr3 (13-77)||(14258960-14259023)
chr3 (84-235)||(16018989-16019136)
chr3 (173-232)||(25387029-25387088)
[»] chr8 (7 HSPs)
chr8 (84-305)||(24819942-24820160)
chr8 (82-236)||(15061971-15062124)
chr8 (149-301)||(15662802-15662954)
chr8 (86-228)||(16723492-16723632)
chr8 (138-255)||(15550776-15550892)
chr8 (13-73)||(15061824-15061884)
chr8 (186-307)||(22502004-22502125)
[»] chr4 (5 HSPs)
chr4 (84-250)||(16673431-16673597)
chr4 (122-302)||(18448904-18449084)
chr4 (13-82)||(16673668-16673737)
chr4 (13-77)||(41806064-41806127)
chr4 (149-198)||(13933031-13933079)
[»] scaffold0035 (1 HSPs)
scaffold0035 (82-300)||(71223-71437)
[»] scaffold0113 (1 HSPs)
scaffold0113 (87-293)||(24134-24339)
[»] scaffold0338 (1 HSPs)
scaffold0338 (82-235)||(18545-18696)
[»] chr5 (2 HSPs)
chr5 (82-249)||(26058031-26058196)
chr5 (122-235)||(19079584-19079696)
[»] chr6 (5 HSPs)
chr6 (82-296)||(13123109-13123323)
chr6 (87-293)||(12331737-12331940)
chr6 (84-234)||(23846137-23846286)
chr6 (87-166)||(20891709-20891788)
chr6 (13-77)||(15483019-15483083)
[»] scaffold0001 (1 HSPs)
scaffold0001 (318-363)||(420420-420465)
[»] chr2 (2 HSPs)
chr2 (122-255)||(28579640-28579771)
chr2 (82-136)||(16592297-16592351)
[»] scaffold0086 (1 HSPs)
scaffold0086 (150-232)||(11300-11379)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 45341211 - 45341568
Alignment:
Q  13 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaacc 112  Q
    ||||||| |||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  45341211 aatatctaaaatctcatacataaataaaaaacaattc--ggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaact 45341308  T
Q  113 tgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaa 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341309 tgcacgtcgtctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaa 45341408  T
Q  213 atagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaatattatcttaaaatcaatcataacacatca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341409 atagcattcaaggatttcaagtatcacatatacacatgttcatcatcccataatactaacatcatgtgaatattatcttaaaatcaatcataacacatca 45341508  T
Q  313 attttcatttcaacatcaagaggtcatcacatcaccaacaattaaattcatgatgtccat 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45341509 attttcatttcaacatcaagaggtcatcacatcaccaacaattaaattcatggtgtccat 45341568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 4548267 - 4548409
Alignment:
Q  149 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacat----ata 244  Q
    |||||||||||||||| ||| |||||| | ||| |||| ||||||||| |||||||||||||||| ||||||||||||||||||  |||| ||    |||    
T  4548267 cggtcaaccaaacgactatt-aggggtgagataatattccacataatacaatataatcaaagaaa-agcattcaaggatttcaatcatcatatatagata 4548364  T
Q  245 cacatgttcattatcccataatactaacatcatgtgaatattatc 289  Q
     ||||| ||| ||||| |||||||| |||||||||||||||||||    
T  4548365 tacatgctcaatatcctataatactgacatcatgtgaatattatc 4548409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 304
Target Start/End: Complemental strand, 6011586 - 6011403
Alignment:
Q  120 catctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcat 219  Q
    |||||||||||||| || |||||| ||  |||||||||||||||| | |||||||||| ||| || ||||||||| || |||||| || ||| ||| |||    
T  6011586 catctacaccatttttagaaatggtgaggcggtcaaccaaacgacaactgaggggttagataata-ttcacataaaaagatataagcatagatataacat 6011488  T
Q  220 tcaaggatttcaagtatcacatatacacatgttcattatcccat-aatactaacatcatgtgaatattatcttaaaatcaatcata 304  Q
    || | || ||||  ||||||||| | |||| ||||| || || | |||||||||||| | ||||||| ||||| ||  ||||||||    
T  6011487 tctacga-ttcacatatcacatacatacatattcatcattccttgaatactaacatcttatgaatatcatcttcaatccaatcata 6011403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 11622506 - 11622442
Alignment:
Q  228 ttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatattatctt 291  Q
    ||||||||||||||||| |||||||||| | ||| | |||||||||||||| | |||||||||||    
T  11622506 ttcaagtatcacatatatacatgttcatcattcctaaaatactaacatcatataaatattatctt 11622442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 19432474 - 19432388
Alignment:
Q  148 acggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat 236  Q
    ||||||||||||||||| |  | || |||| ||| |||| || ||||||||||||||||||  ||||||||||||| ||||||||||||    
T  19432474 acggtcaaccaaacgactac-gtggagttagataatattccatataataaaatataatcaat-aaatagcattcaatgatttcaagtat 19432388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 84 - 294
Target Start/End: Original strand, 19800545 - 19800754
Alignment:
Q  84 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 183  Q
    |||||| ||||||||| | |||||||||||||||||| | ||||||||| |||||||||||||  | ||||||||||| |||| ||  |||| | ||| |    
T  19800545 agcacttacaagcaatgcaaactcaaacctgcacgtcgtgtacaccatt-ataaaaatggcgaggcagtcaaccaaacaaccactggtgggtgagataat 19800643  T
Q  184 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat 283  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||| |||| |||| | ||||||| ||||||| ||||    
T  19800644 attccacataataaaatctaatcaaagaaatagcattcaaggatttcaaataccacatatatacatgctcatcatcctagaatactatcatcatgcgaat 19800743  T
Q  284 attatcttaaa 294  Q
    |||||| ||||    
T  19800744 attatcataaa 19800754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 14258960 - 14259023
Alignment:
Q  13 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 77  Q
    ||||||||||||||||||||||| || ||||||||||||  |||||||||||||||||| |||||    
T  14258960 aatatctcaaatctcatacataa-tagacaacaagtctcatcaataatataaatacataacataa 14259023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 16019136 - 16018989
Alignment:
Q  84 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 183  Q
    ||||||||||| ||| | |||||||||| |||||||| || |||||||||||| ||||||  |   ||||||||||| ||||||||  || ||| ||| |    
T  16019136 agcactcacaaacaacaagaactcaaacatgcacgtcgtccacaccatttatacaaatgggtaggtggtcaaccaaatgaccattg-tggtttatataat 16019038  T
Q  184 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta 235  Q
    ||| || ||||||||| ||   || | |||||||||||||||||||||||||    
T  16019037 attccatataataaaacat--gcata-aaatagcattcaaggatttcaagta 16018989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 25387088 - 25387029
Alignment:
Q  173 ggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa 232  Q
    |||||||||  |||||||||||||||||||||| || |||||| ||||||| ||||||||    
T  25387088 ggttaaataacatttcacataataaaatataataaaggaaataacattcaaagatttcaa 25387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 84 - 305
Target Start/End: Complemental strand, 24820160 - 24819942
Alignment:
Q  84 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 183  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||||| | | ||| |||| ||| |    
T  24820160 agcactcacaagcaatacga-ctcaaacctgcacgtcatctacaccatttatacaaatggtgaggcggtcaaccaaacgacaact-aggagttagataat 24820063  T
Q  184 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat 283  Q
    ||| |||||| ||||||| || || | |||||| |||||||||||||||  |||||||||| ||||| |||| |||| | |||||||||||| | |||||    
T  24820062 attccacatagtaaaataaaagcaca-aaatagaattcaaggatttcaaacatcacatatatacatgctcatcatcctagaatactaacatcgtatgaat 24819964  T
Q  284 attatcttaaaatcaatcataa 305  Q
    ||| || |||||||||| ||||    
T  24819963 attgtcataaaatcaatgataa 24819942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 15061971 - 15062124
Alignment:
Q  82 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 181  Q
    ||||||||||||||||||| |||||||| | |||||||| ||||||||||| ||| ||||||  |  ||||||||||||| |||| |||  ||||| |||    
T  15061971 caagcactcacaagcaataggaactcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactga-aggttagata 15062069  T
Q  182 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat 236  Q
     |||| |||||||||||||||||||||  ||||  || |||||||||||||||||    
T  15062070 atattccacataataaaatataatcaagtaaatgacagtcaaggatttcaagtat 15062124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 301
Target Start/End: Complemental strand, 15662954 - 15662802
Alignment:
Q  149 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacaca 248  Q
    |||||||||||||||||| |  ||||||| ||| |||| ||||||| || ||| || || | ||||||||||| ||  |||||||||||||||||| |||    
T  15662954 cggtcaaccaaacgaccactagggggttagataatatt-cacataaaaagatacaagcacaaaaatagcattctagattttcaagtatcacatatataca 15662856  T
Q  249 tgttcatta-tcccataatactaacatcatgtgaatattatcttaaaatcaatc 301  Q
    || ||| || ||| | |||||||||||| | ||||||||||||| || ||||||    
T  15662855 tgctcaatattcctagaatactaacatcgtatgaatattatcttcaattcaatc 15662802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 16723492 - 16723632
Alignment:
Q  86 cactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtat 185  Q
    ||||||||||||||||| ||||||  ||||||||  ||||||||||| ||| ||||||  |  |||| || |||||||||| |||  ||||| ||| |||    
T  16723492 cactcacaagcaatacggactcaagtctgcacgttgtctacaccattcatacaaatgggtaggcggtaaatcaaacgaccaatga--ggttagataatat 16723589  T
Q  186 ttcacataataaaatataatcaaagaaatagcattcaaggatt 228  Q
    |||| || |||||||| |||||||| ||||| |||||| ||||    
T  16723590 ttcatatgataaaataaaatcaaagtaatagaattcaatgatt 16723632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 15550892 - 15550776
Alignment:
Q  138 aaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatc 237  Q
    |||||| || || |||||||||||||||| | || ||||| ||| |||| ||||||| || ||||||||| | ||||||||||| |  |||||||| |||    
T  15550892 aaatggtgagacagtcaaccaaacgaccactaagaggttatataatatt-cacataaaaatatataatcacaaaaatagcattctataatttcaagaatc 15550794  T
Q  238 acatatacacatgttcat 255  Q
    ||||||| ||||| ||||    
T  15550793 acatatatacatgctcat 15550776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 15061824 - 15061884
Alignment:
Q  13 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagc 73  Q
    |||||||||||| ||| ||||||||| ||| ||||||||  |||||| |||||||||||||    
T  15061824 aatatctcaaatttcagacataaatagacagcaagtctcatcaataaaataaatacatagc 15061884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 307
Target Start/End: Complemental strand, 22502125 - 22502004
Alignment:
Q  186 ttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatccc-ataatactaacatcatgtgaata 284  Q
    ||||||||| || |||||| || | | ||| ||||| |||||| ||| ||||||||||| ||||| |||| || || | ||||||| |||||  ||||||    
T  22502125 ttcacataaaaatatataagcacaaatataacattctaggatt-caaatatcacatatatacatgctcatcattcctagaatactaccatcacatgaata 22502027  T
Q  285 ttatcttaaaatcaatcataaca 307  Q
    ||||||| || ||||||||||||    
T  22502026 ttatctttaattcaatcataaca 22502004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 84 - 250
Target Start/End: Complemental strand, 16673597 - 16673431
Alignment:
Q  84 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 183  Q
    |||||||||||| |||||||||||||||||||| ||  |||||||||||| || |||| | ||   | ||||||||||||||| || |  |||| ||| |    
T  16673597 agcactcacaagtaatacgaactcaaacctgcatgttgtctacaccatttttagaaatagtgaggtgctcaaccaaacgaccactgggatgttagataat 16673498  T
Q  184 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatg 250  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  16673497 attccacataataaaatttaatcaaagaaatagcattcaaggatttcaagtatcaaatatatacatg 16673431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 302
Target Start/End: Original strand, 18448904 - 18449084
Alignment:
Q  122 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 221  Q
    |||||||||||| || |||||| ||  |||||||| ||||||||| |  ||||||| ||| |||| ||||||| ||  ||||| || | || |||||||     
T  18448904 tctacaccatttttataaatggtgaggcggtcaactaaacgaccactagggggttagataatatt-cacataaaaacgtataagcacaaaagtagcatta 18449002  T
Q  222 aaggatttcaagtatcacatatacacatgttcattatccc-ataatactaacatcatgtgaatattatcttaaaatcaatca 302  Q
     || ||||||||||||||||||  |||||  || ||| |  | |||||||||||||||||||||||||||| || |||||||    
T  18449003 tagaatttcaagtatcacatatttacatgcacaatattcttacaatactaacatcatgtgaatattatcttcaactcaatca 18449084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 16673737 - 16673668
Alignment:
Q  13 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataagtccc 82  Q
    |||||||||||||| | ||||||||||||||||||| |  ||||||| ||||||||| | ||||||||||    
T  16673737 aatatctcaaatcttagacataaataaacaacaagttttagcaataacataaatacacaacataagtccc 16673668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 41806064 - 41806127
Alignment:
Q  13 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 77  Q
    |||||||||||||||| |||||| || | |||||||||||||| |||||||||| ||||||||||    
T  41806064 aatatctcaaatctcagacataa-tagataacaagtctcggcagtaatataaatgcatagcataa 41806127  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 13933031 - 13933079
Alignment:
Q  149 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaa 198  Q
    |||||||||||||||||| || ||||||| ||| ||||||||||||||||    
T  13933031 cggtcaaccaaacgaccactg-ggggttagataatatttcacataataaa 13933079  T

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Target: scaffold0035 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 82 - 300
Target Start/End: Complemental strand, 71437 - 71223
Alignment:
Q  82 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 181  Q
    ||||||||||||||||||| |||||  | | |||||  | |||||| |||||||| ||||||  |  |||||||||||||||||| |||||| ||| |||    
T  71437 caagcactcacaagcaataagaacttgatcatgcacaccgtctacaacatttatacaaatgggtaggcggtcaaccaaacgaccagtgaggg-ttagata 71339  T
Q  182 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtga 281  Q
     |||| |||||||||| ||||||||||||||   ||||||||| ||||||||||| ||||| | |||| ||||| |||| | ||||||||||||||| ||    
T  71338 atattccacataataagatataatcaaagaa---gcattcaagaatttcaagtattacatacatacatattcatcatcctagaatactaacatcatgcga 71242  T
Q  282 atattatcttaaaatcaat 300  Q
    |||||||| |||| |||||    
T  71241 atattatcctaaactcaat 71223  T

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Target: scaffold0113 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 293
Target Start/End: Complemental strand, 24339 - 24134
Alignment:
Q  87 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt 186  Q
    |||||||| ||||| |  ||||| | |||||||| ||||||||||| ||| ||||||  |  ||||||||||||| |||| |||||| ||| |||  |||    
T  24339 actcacaaacaataagttctcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactgaggg-ttagataacatt 24241  T
Q  187 tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat 285  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||||  || ||| |||| ||||| | ||| | ||||||||||||||||||||||    
T  24240 tcacataataaaatataatcata-aaataacattcaaggatttcaagtatagcacatatacatattcatcactcctagaatactaacatcatgtgaatat 24142  T
Q  286 tatcttaa 293  Q
    ||||||||    
T  24141 tatcttaa 24134  T

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Target: scaffold0338 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 18696 - 18545
Alignment:
Q  82 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 181  Q
    |||||||||||||| |||| |||||||| | |||||| | | ||||||||| ||| ||||||  | ||||||||||||||||||| ||| |||||| |||    
T  18696 caagcactcacaagaaataagaactcaatcatgcacgccgtttacaccattcatacaaatgggtagacggtcaaccaaacgaccactga-gggttagata 18598  T
Q  182 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta 235  Q
     |||| |||||||||||||||||||| | ||| |||||||||||||||||||||    
T  18597 atattccacataataaaatataatcata-aaacagcattcaaggatttcaagta 18545  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 249
Target Start/End: Original strand, 26058031 - 26058196
Alignment:
Q  82 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 181  Q
    |||||||| | |||||||| |||||||| | |||||  | ||||||||||||||| ||||||  |  || ||||||||| ||||| | |||||||| |||    
T  26058031 caagcacttataagcaataagaactcaatcatgcactccgtctacaccatttatacaaatgggtaggcgatcaaccaaatgaccact-aggggttagata 26058129  T
Q  182 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacat 249  Q
     |||| |||||||||||||||||||| | ||||| |||||||||||||||||||| | | ||||||||    
T  26058130 atattccacataataaaatataatcata-aaatatcattcaaggatttcaagtattatacatacacat 26058196  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 19079696 - 19079584
Alignment:
Q  122 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 221  Q
    |||||||||||| ||||||||| ||  ||||||||||||| |||| || | ||||| |||  | ||||||||| || |||||| || ||||||||||||     
T  19079696 tctacaccatttttaaaaatggtgagccggtcaaccaaacaaccactgggaggttagataaca-ttcacataaaaagatataagcacagaaatagcatta 19079598  T
Q  222 aaggatttcaagta 235  Q
     ||||||| |||||    
T  19079597 taggatttaaagta 19079584  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 296
Target Start/End: Complemental strand, 13123323 - 13123109
Alignment:
Q  82 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 181  Q
    ||||||||||||||||||| ||| ||||   |||||| | ||||||||||| ||| ||||||  || ||| ||| ||||||| || ||| |||||| ||     
T  13123323 caagcactcacaagcaataagaaatcaattttgcacgccgtctacaccattcatacaaatgggtaagcggccaatcaaacgatcactga-gggttagatt 13123225  T
Q  182 gtatttcacataataaaatataatc-aaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgt 279  Q
     || ||||| ||||||||||||||| ||| ||||||||||||| |||||||| ||  ||| ||  ||||| |||| | ||  | ||||||||||| ||||    
T  13123224 ata-ttcacgtaataaaatataatcaaaataaatagcattcaatgatttcaattaatacacatgtacatgctcatcattcgtaaaatactaacataatgt 13123126  T
Q  280 gaatattatcttaaaat 296  Q
    |||||||||||| ||||    
T  13123125 gaatattatcttcaaat 13123109  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 293
Target Start/End: Complemental strand, 12331940 - 12331737
Alignment:
Q  87 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt 186  Q
    |||||||||||||| ||||| || | | || ||| ||||||||||| ||| ||||||  |  |||||||| ||||||||| |  ||||||| ||  ||||    
T  12331940 actcacaagcaataagaacttaatcatacatgtcgtctacaccattcatacaaatgggtaggcggtcaactaaacgaccact--ggggttagattatatt 12331843  T
Q  187 tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat 285  Q
     ||||||||||||||||| || | |||||| |||| |||||||  |||||  || ||| |||| ||||| | ||| | |||||||||||||| |||||||    
T  12331842 ccacataataaaatataaacata-aaatagaattctaggattt-tagtatagcacatatacatattcatcactcctagaatactaacatcatatgaatat 12331745  T
Q  286 tatcttaa 293  Q
    ||||||||    
T  12331744 tatcttaa 12331737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 234
Target Start/End: Complemental strand, 23846286 - 23846137
Alignment:
Q  84 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 183  Q
    ||||||||||| ||||| ||| |||||| |||| |  ||||||||||||| | ||||| |  |  |||| ||||||||||||| ||  |||| | ||| |    
T  23846286 agcactcacaatcaataagaaatcaaacatgcatgctatctacaccattttttaaaatagtaatgcggttaaccaaacgaccactggagggtgagataat 23846187  T
Q  184 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagt 234  Q
    ||||||||| ||||||||||| || | ||||| |||||| |||||||||||    
T  23846186 atttcacatgataaaatataaacata-aaataacattcatggatttcaagt 23846137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 20891709 - 20891788
Alignment:
Q  87 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgacca 166  Q
    |||||||||||||| ||| |||| | |||||| | ||||||||||| ||| ||||||  |  ||||||||||||||||||    
T  20891709 actcacaagcaataagaaatcaatcatgcacgccgtctacaccattcatacaaatgggtaggcggtcaaccaaacgacca 20891788  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 15483083 - 15483019
Alignment:
Q  13 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 77  Q
    |||||||||||||||| |||||| || |||| ||||||| |||  || ||||||||||| |||||    
T  15483083 aatatctcaaatctcaaacataactagacaataagtctcagcagcaacataaatacataacataa 15483019  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 420420 - 420465
Alignment:
Q  318 catttcaacatcaagaggtcatcacatcaccaacaattaaattcat 363  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  420420 catttcaacatcaagaggtcatcacatcaccaataattaaattcat 420465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 28579771 - 28579640
Alignment:
Q  122 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 221  Q
    ||||||| |||| || |||||| || | |||||||||||||||||||| ||||||| ||| || |||||| || || |||||| || | | ||||||||     
T  28579771 tctacactatttttacaaatggagagatggtcaaccaaacgaccattgtggggttagataata-ttcacacaaaaagatataagcacaaatatagcattt 28579673  T
Q  222 aaggatttcaagtatcacatatacacatgttcat 255  Q
     |||| ||||| ||||||||||| ||||| ||||    
T  28579672 tagga-ttcaaatatcacatatatacatgctcat 28579640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 16592351 - 16592297
Alignment:
Q  82 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttata 136  Q
    ||||||||||| ||||||| |||||||| |||||||| | ||| |||||||||||    
T  16592351 caagcactcactagcaataagaactcaatcctgcacgccgtctccaccatttata 16592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 11379 - 11300
Alignment:
Q  150 ggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa 232  Q
    |||||||||||||| || || |||||||||||||||| |||| ||| ||| ||||||||| ||| || |||||||||||||||    
T  11379 ggtcaaccaaacgatcactg-ggggttaaatagtattccacacaat-aaacataatcaaataaa-agtattcaaggatttcaa 11300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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