View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7076_high_5 (Length: 423)
Name: NF7076_high_5
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7076_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 25930191 - 25930520
Alignment:
| Q |
10 |
tcgaagaatatgtgagacactcaaaacgagttatcttttgtcaatcagannnnnnncatacaaatgaattaaaaatcaaacatttgatgatatgtttaag |
109 |
Q |
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| T |
25930191 |
tcgaagaatatgtgagacacacaaaaccagttatcttttgtcaatcagatttttt-catacaaatgaattaaaaatcgaacatttgatgatatgtttaag |
25930289 |
T |
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| Q |
110 |
gaactaaaattccttatca-ttaaacctatctattatttgatagtttatatgattattactcatcccattttacaatgattgtcagtttaacaaagtaag |
208 |
Q |
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| T |
25930290 |
gaactaaaattccttatcacttaaacctgtctattatttgatagttgatatgattattactcatcccattttacaatgattgtca-tttaacaaaataag |
25930388 |
T |
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| Q |
209 |
ttatttaaatataaatgtcaccttcaattttaaatgtaataaaataagttgatatgcttatatattatggtatagaacttttaaccctttaaaattgaaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
25930389 |
ttatttaaatataaatgtcaccttcaattttaaatgtaacaaaataagttgatatgcttatatattatggtatagaacttttgaccctctaaaattgaaa |
25930488 |
T |
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| Q |
309 |
cctaacgtatacttagatttgaattttggatt |
340 |
Q |
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|| ||| |||| |||||||||||||||||||| |
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| T |
25930489 |
ccaaacttataattagatttgaattttggatt |
25930520 |
T |
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