View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7076_high_8 (Length: 353)

Name: NF7076_high_8
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7076_high_8
NF7076_high_8
[»] chr6 (5 HSPs)
chr6 (9-353)||(8148088-8148407)
chr6 (49-95)||(13815166-13815212)
chr6 (50-84)||(33076417-33076451)
chr6 (50-83)||(2493431-2493464)
chr6 (50-82)||(17168903-17168935)
[»] chr5 (3 HSPs)
chr5 (42-83)||(16881137-16881178)
chr5 (50-83)||(38749580-38749613)
chr5 (206-250)||(12478335-12478379)
[»] chr3 (4 HSPs)
chr3 (50-90)||(21110473-21110513)
chr3 (50-83)||(12704674-12704707)
chr3 (50-83)||(32166200-32166233)
chr3 (50-83)||(41319327-41319360)
[»] chr8 (5 HSPs)
chr8 (200-251)||(20154001-20154052)
chr8 (200-251)||(20203418-20203469)
chr8 (208-252)||(14229598-14229642)
chr8 (51-83)||(33049123-33049155)
chr8 (206-246)||(40152978-40153018)
[»] chr7 (2 HSPs)
chr7 (200-251)||(44287930-44287981)
chr7 (41-83)||(27980796-27980838)
[»] chr4 (5 HSPs)
chr4 (44-83)||(43093542-43093581)
chr4 (50-83)||(2976703-2976736)
chr4 (50-83)||(8457934-8457967)
chr4 (50-83)||(27096018-27096051)
chr4 (50-98)||(28158017-28158065)
[»] chr1 (3 HSPs)
chr1 (52-83)||(24701117-24701148)
chr1 (50-84)||(29230074-29230108)
chr1 (50-83)||(30847737-30847770)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 353
Target Start/End: Original strand, 8148088 - 8148407
Alignment:
Q  9 agcagagacacaggactcgatactaacactttgatacccaaaataatttgaaaaaatgacataattgaatgtaatactatgtttcaatgtcgtatcagta 108  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  8148088 agcacagacaccggactcgatactaacactttgatacccaaaataatttgagaaaatgacataattgaatgtaatcgtatgtttcaatgtcgtatcagta 8148187  T
Q  109 tagtgtggtgttatatatgacattcagttg-ttattcatccaaacaggtcatggcaaaggtcatggcaatactagaaggtaatagaaattgagaactatg 207  Q
    |||||||||||||||||||||||||||||| ||||||||||||||            |||||||||||||| ||||||||||||||||||||||||||||    
T  8148188 tagtgtggtgttatatatgacattcagttgtttattcatccaaac------------aggtcatggcaatattagaaggtaatagaaattgagaactatg 8148275  T
Q  208 tagcaccgacatttccgatggaaggcatgtccggtgtccgacaccgagacgacactgacactgacgcatgtaattatattcaattaagtcacttttacaa 307  Q
    ||||||||||||||||||||||||||||||| ||||||||||||              |||||||||||||||||||||||||||||||||||||||||     
T  8148276 tagcaccgacatttccgatggaaggcatgtctggtgtccgacac--------------cactgacgcatgtaattatattcaattaagtcacttttacag 8148361  T
Q  308 tcagtgtcgaatccatgtcaacgtgtcagggtcgtatccagtgtgt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8148362 tcagtgtcgaatccatgtcaacgtgtcagggtcgtatccagtgtgt 8148407  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 13815212 - 13815166
Alignment:
Q  49 aaataatttgaaaaaatgacataattgaatgtaatactatgtttcaa 95  Q
    ||||||||| | |||||||||||||||||||||||| ||||| ||||    
T  13815212 aaataatttcataaaatgacataattgaatgtaataatatgtatcaa 13815166  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 33076417 - 33076451
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaata 84  Q
    |||||||||| ||||||||||||||||||||||||    
T  33076417 aataatttgagaaaatgacataattgaatgtaata 33076451  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 2493464 - 2493431
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaat 83  Q
    |||||||||| |||||||||||||||||||||||    
T  2493464 aataatttgacaaaatgacataattgaatgtaat 2493431  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 17168903 - 17168935
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaa 82  Q
    ||||||||||||||||||||||||| |||||||    
T  17168903 aataatttgaaaaaatgacataattcaatgtaa 17168935  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 16881137 - 16881178
Alignment:
Q  42 atacccaaaataatttgaaaaaatgacataattgaatgtaat 83  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  16881137 atacccataataatttgaaaaaatgacataatttaatgtaat 16881178  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 38749613 - 38749580
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaat 83  Q
    ||||||||||||||||||||||||| ||||||||    
T  38749613 aataatttgaaaaaatgacataattcaatgtaat 38749580  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 12478379 - 12478335
Alignment:
Q  206 tgtagcaccgacatttccgatggaaggcatgtccggtgtccgaca 250  Q
    ||||||||||||||||| |||||||||| |||| |||||| ||||    
T  12478379 tgtagcaccgacatttctgatggaaggcgtgtctggtgtctgaca 12478335  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 21110513 - 21110473
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaatactatgt 90  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  21110513 aataatttgagaaaatgacataattgaatgtaatattatgt 21110473  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 12704707 - 12704674
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaat 83  Q
    ||||||||||||||||||||||||| ||||||||    
T  12704707 aataatttgaaaaaatgacataattcaatgtaat 12704674  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 32166233 - 32166200
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaat 83  Q
    |||||||||| |||||||||||||||||||||||    
T  32166233 aataatttgagaaaatgacataattgaatgtaat 32166200  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 41319360 - 41319327
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaat 83  Q
    ||||||||||||||||||||||||| ||||||||    
T  41319360 aataatttgaaaaaatgacataattcaatgtaat 41319327  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 20154001 - 20154052
Alignment:
Q  200 gaactatgtagcaccgacatttccgatggaaggcatgtccggtgtccgacac 251  Q
    |||||||||||||||| || ||| |||||||||| |||||||||| ||||||    
T  20154001 gaactatgtagcaccggcacttctgatggaaggcgtgtccggtgttcgacac 20154052  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 20203469 - 20203418
Alignment:
Q  200 gaactatgtagcaccgacatttccgatggaaggcatgtccggtgtccgacac 251  Q
    |||||||||||||||| || ||| |||||||||| |||||||||| ||||||    
T  20203469 gaactatgtagcaccggcacttctgatggaaggcgtgtccggtgttcgacac 20203418  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 14229642 - 14229598
Alignment:
Q  208 tagcaccgacatttccgatggaaggcatgtccggtgtccgacacc 252  Q
    |||||| |||| ||| ||| |||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgacacc 14229598  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 33049155 - 33049123
Alignment:
Q  51 ataatttgaaaaaatgacataattgaatgtaat 83  Q
    |||| ||||||||||||||||||||||||||||    
T  33049155 ataacttgaaaaaatgacataattgaatgtaat 33049123  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 40152978 - 40153018
Alignment:
Q  206 tgtagcaccgacatttccgatggaaggcatgtccggtgtcc 246  Q
    |||||||||||| |||| ||||||||||||||||| |||||    
T  40152978 tgtagcaccgacttttctgatggaaggcatgtccgctgtcc 40153018  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 44287981 - 44287930
Alignment:
Q  200 gaactatgtagcaccgacatttccgatggaaggcatgtccggtgtccgacac 251  Q
    |||||||||||||||| || ||| |||||||||| |||||||||| ||||||    
T  44287981 gaactatgtagcaccggcacttctgatggaaggcgtgtccggtgttcgacac 44287930  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 27980796 - 27980838
Alignment:
Q  41 gatacccaaaataatttgaaaaaatgacataattgaatgtaat 83  Q
    |||||| |||||||||| |||||||||||||||| ||||||||    
T  27980796 gataccgaaaataattttaaaaaatgacataattcaatgtaat 27980838  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 43093581 - 43093542
Alignment:
Q  44 acccaaaataatttgaaaaaatgacataattgaatgtaat 83  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  43093581 acccataataatttgaaaaaatggcataattgaatgtaat 43093542  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 2976703 - 2976736
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaat 83  Q
    |||||||||| |||||||||||||||||||||||    
T  2976703 aataatttgagaaaatgacataattgaatgtaat 2976736  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 8457934 - 8457967
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaat 83  Q
    |||||||||| |||||||||||||||||||||||    
T  8457934 aataatttgagaaaatgacataattgaatgtaat 8457967  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 27096051 - 27096018
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaat 83  Q
    |||||||||| |||||||||||||||||||||||    
T  27096051 aataatttgacaaaatgacataattgaatgtaat 27096018  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 28158017 - 28158065
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaatactatgtttcaatgt 98  Q
    ||||||||||||||||||||| ||| ||||||||  ||||| |||||||    
T  28158017 aataatttgaaaaaatgacatgatttaatgtaattatatgtgtcaatgt 28158065  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 24701148 - 24701117
Alignment:
Q  52 taatttgaaaaaatgacataattgaatgtaat 83  Q
    ||||||||||||||||||||||||||||||||    
T  24701148 taatttgaaaaaatgacataattgaatgtaat 24701117  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 29230074 - 29230108
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaata 84  Q
    |||||||||| ||||||||||||||||||||||||    
T  29230074 aataatttgagaaaatgacataattgaatgtaata 29230108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 30847770 - 30847737
Alignment:
Q  50 aataatttgaaaaaatgacataattgaatgtaat 83  Q
    ||||||||||||||||||||||||| ||||||||    
T  30847770 aataatttgaaaaaatgacataattcaatgtaat 30847737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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