View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7076_high_9 (Length: 293)
Name: NF7076_high_9
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7076_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 14694436 - 14694709
Alignment:
| Q |
7 |
tttggtgttgggcaagacggagttcacacacattgtgatagttcgagtgccatttatttgataaatagtcaagtgtatcatgccatgatcaaacatattg |
106 |
Q |
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| T |
14694436 |
tttgatgttgggcaagacggagttcacacacattgtgatagttcgagtgccatttatttgataaatagtcaagtgtatcatgccatgatcaaacatattg |
14694535 |
T |
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| Q |
107 |
atatgaggttttactaga-----gagttaattgtatttggacaaatattactttaagagattcgtacgtactttagagaatgcacctcatatgttgatca |
201 |
Q |
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| T |
14694536 |
atatgaggttttacaagactaaagagttaattgcatttggacaaatattactttaaaagattcgtacgtgctttagagaatgcacctcatatgttgatca |
14694635 |
T |
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| Q |
202 |
agtcaatcaataatgacaaacacaagtgcaattaagtatggctcatagacagtgttagatgggtagggacgagc |
275 |
Q |
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| T |
14694636 |
agtcaatcaataatgacaaacacaagtgcaatcaagtatggctcatagacagtgttagatgggtagggacgagc |
14694709 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 34726897 - 34726980
Alignment:
| Q |
37 |
cattgtgatagttcgagtgccatttatttgataaatagtcaagtgtatcatgccatgatcaaacatattgatatgaggttttac |
120 |
Q |
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| T |
34726897 |
cattgtgatagttatagtgtcatttatttgaaaaataatcaagtgtatcatgccaaaaccaagcatattgatgtgagtttttac |
34726980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 32985465 - 32985545
Alignment:
| Q |
37 |
cattgtgatagttcgagtgccatttatttgataaatagtcaagtgtatcatgccatgatcaaacatattgatatgaggttt |
117 |
Q |
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| T |
32985465 |
cattgtgatagtcagagtgtcatttatttgacaaacaatcaagtgtatcatgccaatatcaagcatattgatgtaaggttt |
32985545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 9838262 - 9838339
Alignment:
| Q |
40 |
tgtgatagttcgagtgccatttatttgataaatagtcaagtgtatcatgccatgatcaaacatattgatatgaggttt |
117 |
Q |
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| T |
9838262 |
tgtgatagttggagtgtcatttatttggcaaataatcaagtgtatcatgccaagaccaagcatattgatgcgaggttt |
9838339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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