View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7076_low_11 (Length: 309)
Name: NF7076_low_11
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7076_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 7141399 - 7141214
Alignment:
| Q |
1 |
ctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctgaaattatagaagaacatgtatagaattcaataatattgg |
100 |
Q |
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| T |
7141399 |
ctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctgaaattatagaagaacatgtatagaattcaataatattgg |
7141300 |
T |
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| Q |
101 |
actagcaattgcaccttaaaaccataggctaaaatatttgtgcagaatttaatggaaaaacaaaggaaataggaaattagggttat |
186 |
Q |
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| T |
7141299 |
actagcaattgcaccttaaaaccataggctaaaatatttgtgcagaatttaatggaaaaacaaaggaaataggaaattagggttat |
7141214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 212 - 293
Target Start/End: Complemental strand, 7141216 - 7141135
Alignment:
| Q |
212 |
tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttgg |
293 |
Q |
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| T |
7141216 |
tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggctaccactttgttgg |
7141135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7154169 - 7154105
Alignment:
| Q |
1 |
ctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctgaaat |
65 |
Q |
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| T |
7154169 |
ctgacatagcccactctattgttgtcgatgttgtatcagttccggcaacaaatacgtcctgaaat |
7154105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 7153046 - 7152966
Alignment:
| Q |
213 |
ataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttgg |
293 |
Q |
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| T |
7153046 |
ataagttcattgtaactaacccaaatcacagctttgatgttgttggttgttattttgatatcaaggttatcactttgttgg |
7152966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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