View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7076_low_17 (Length: 237)

Name: NF7076_low_17
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7076_low_17
NF7076_low_17
[»] chr3 (2 HSPs)
chr3 (1-237)||(16680010-16680245)
chr3 (22-78)||(21347537-21347593)
[»] chr4 (2 HSPs)
chr4 (5-74)||(33130334-33130403)
chr4 (2-80)||(3285632-3285710)
[»] chr5 (2 HSPs)
chr5 (2-78)||(1549864-1549940)
chr5 (9-70)||(40560868-40560929)
[»] chr8 (1 HSPs)
chr8 (180-237)||(34670317-34670374)
[»] chr1 (2 HSPs)
chr1 (2-70)||(30993236-30993304)
chr1 (2-70)||(43070329-43070397)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16680010 - 16680245
Alignment:
Q  1 actgacccaaactataaatccggtgaaccaaactagaaaagcccaatcctctttcatttgacctgatccaatccatttatnnnnnnnnnnnnntattaaa 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||             |||||||    
T  16680010 actgacccaaactataaatctggtgaaccaaactagaaaagcccaatccactttcatttgacctgatccaatccatttataaaaaaaaaaaa-tattaaa 16680108  T
Q  101 acgggtctcggttaccatttgacccttcacactcacaaacacgatttcttcataatttcttctccaaacgctattgctaatggcattcaaatgtccagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16680109 acgggtctcggttaccatttgacccttcacactcacaaacacgatttcttcataatttcttctccaaacgctattgctaatggcattcaaatgtccagaa 16680208  T
Q  201 cccttaaggttgcatagggtaactccacatctccttc 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  16680209 cccttaaggttgcatagggtaactccacatctccttc 16680245  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 21347537 - 21347593
Alignment:
Q  22 ggtgaaccaaactagaaaagcccaatcctctttcatttgacctgatccaatccattt 78  Q
    ||||||||||| ||||||||||||| || |||||||||||| ||||||||| |||||    
T  21347537 ggtgaaccaaagtagaaaagcccaaaccactttcatttgacttgatccaattcattt 21347593  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 33130334 - 33130403
Alignment:
Q  5 acccaaactataaatccggtgaaccaaactagaaaagcccaatcctctttcatttgacctgatccaatcc 74  Q
    ||||||||| |||||  ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  33130334 acccaaactttaaatatggtgaaccaaactagaaaagctcaatccactttcttttgacctgatccaatcc 33130403  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 3285710 - 3285632
Alignment:
Q  2 ctgacccaaactataaatccggtgaaccaaactagaaaagcccaatcctctttcatttgacctgatccaatccatttat 80  Q
    |||| ||||||| |||||| | |||| ||||||||||||| ||||||| ||||||||| |||| ||||||| |||||||    
T  3285710 ctgatccaaactgtaaatctgatgaatcaaactagaaaagtccaatccactttcatttaacctaatccaattcatttat 3285632  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 1549940 - 1549864
Alignment:
Q  2 ctgacccaaactataaatccggtgaaccaaactagaaaagcccaatcctctttcatttgacctgatccaatccattt 78  Q
    |||||||||||| |||||| ||||||||||| |||||||||  ||||| |||||||||||| ||| |||||||||||    
T  1549940 ctgacccaaactgtaaatctggtgaaccaaattagaaaagctaaatccactttcatttgacttgagccaatccattt 1549864  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 40560929 - 40560868
Alignment:
Q  9 aaactataaatccggtgaaccaaactagaaaagcccaatcctctttcatttgacctgatcca 70  Q
    ||||| |||||| ||||||| ||||||||||| | ||| || ||||||||| ||||||||||    
T  40560929 aaactgtaaatctggtgaacgaaactagaaaaactcaaaccactttcatttaacctgatcca 40560868  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 34670317 - 34670374
Alignment:
Q  180 atggcattcaaatgtccagaacccttaaggttgcatagggtaactccacatctccttc 237  Q
    ||||| ||||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  34670317 atggcgttcaaatgtccagaaaccataaggtcgcatagggtaactccacatctccttc 34670374  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 30993304 - 30993236
Alignment:
Q  2 ctgacccaaactataaatccggtgaaccaaactagaaaagcccaatcctctttcatttgacctgatcca 70  Q
    ||||||||||||  ||||  ||||||||||| ||||||||||||| ||  |||||||||||||||||||    
T  30993304 ctgacccaaactgaaaatttggtgaaccaaattagaaaagcccaaaccattttcatttgacctgatcca 30993236  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 43070329 - 43070397
Alignment:
Q  2 ctgacccaaactataaatccggtgaaccaaactagaaaagcccaatcctctttcatttgacctgatcca 70  Q
    ||||||||||||  ||||  ||||||||||| ||||||||||||| ||  |||||||||||||||||||    
T  43070329 ctgacccaaactgaaaatttggtgaaccaaattagaaaagcccaaaccattttcatttgacctgatcca 43070397  T

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