View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7076_low_19 (Length: 220)
Name: NF7076_low_19
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7076_low_19 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 7141937 - 7141718
Alignment:
| Q |
1 |
gttggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggagttcccagt |
100 |
Q |
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| T |
7141937 |
gttggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggagttcccagt |
7141838 |
T |
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| Q |
101 |
taaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactc |
200 |
Q |
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| T |
7141837 |
taaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactc |
7141738 |
T |
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| Q |
201 |
gaagttatttcctttgaaat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
7141737 |
gaagttatttcctttgaaat |
7141718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 7154704 - 7154488
Alignment:
| Q |
4 |
ggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggagttcccagttaa |
103 |
Q |
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| T |
7154704 |
ggaatcaaacacaactcattttcccttccaactgccaatccaacattttcagtcatatccaaatcctcaggtttcatctgatttggtagttcccaattaa |
7154605 |
T |
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| Q |
104 |
agtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaa |
203 |
Q |
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| T |
7154604 |
aatgatatagtaataaagcaagaggaagcataacactagctataccaaatgacatgcctggacacattcttcttccagcaccaaaaggaatatactcaaa |
7154505 |
T |
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| Q |
204 |
gttatttcctttgaaat |
220 |
Q |
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| T |
7154504 |
attatttcctttgaaat |
7154488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 22986265 - 22986322
Alignment:
| Q |
163 |
ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaat |
220 |
Q |
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| T |
22986265 |
ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaat |
22986322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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